CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
GH11645
(
Drosophila grimshawi
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
FBgn0119125
T43441_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
aret
M003_0.6
Drosophila melanogaster
UKUKUGU
RNAcompete
Ray et al.(2013)
RNCMPT00003
0.763
aret
M110_0.6
Drosophila melanogaster
UKUKUGU
RNAcompete
Ray et al.(2013)
RNCMPT00114
0.763
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0145551
RRM
315
384
MFVGQIPKTWDEIKLRCLFEQFGRVHTLNVLRDKVTSISRGCCFVTYYTRKAALRAQDALHNIKTLDGMH
FBpp0145551
RRM
402
470
LFVGMLNKKYTEADVRQLFAGHGTIEECTVLRDQVGQSKGCAFVTFATKQNAIGAIKSLHQSQTMEGCS
FBpp0145551
RRM
708
778
LFIYHLPQEFTDTDLASTFLPFGNVLSAKVFIDKQTNLSKCFGFVSYDNPHSANAAIQAMHGFQIGTKRLK
Links
Other
RRM
family RBPs
Other
Drosophila grimshawi
RBPs
17 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
A6MLI3_CALJA
Callithrix jacchus
ENSCJAG00000014884
I
0.000
srsf5b
Danio rerio
ENSDARG00000027734
I
0.000
SRSF5
Gasterosteus aculeatus
ENSGACG00000007834
I
0.000
Q5ZLF9_CHICK
Gallus gallus
ENSGALG00000009421
I
0.000