CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GA26680-RA
(
Drosophila pseudoobscura
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
FBgn0248053
T44401_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0282434
RRM
174
244
IFVGDLSSEIETQQLREAFTPFGEISDCRVVRDPQTLKSKGYGFVSFIKKSEAESAITAMNGQWLGSRSIR
FBpp0282434
RRM
278
345
VYVGGVNSALTALSEEVLQKTFAPYGAIQEIRVFKDKGYAFVRFSTKEAATHAIVGVHNTELNAQPVK
Links
Other
RRM
family RBPs
Other
Drosophila pseudoobscura
RBPs
17 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
DGIL_AUG5s2018g1t1
Acyrtosiphon pisum
DGIL_AUG5s2018g1t1
N
0.741
GE23777
Drosophila yakuba
FBgn0240933
N
0.993
GK22641
Drosophila willistoni
FBgn0224618
N
0.986
GJ22770
Drosophila virilis
FBgn0209874
N
0.827
GJ22768
Drosophila virilis
FBgn0209872
N
0.993
GD21365
Drosophila simulans
FBgn0192802
N
0.827
GD21364
Drosophila simulans
FBgn0192801
N
0.993
GM16370
Drosophila sechellia
FBgn0171285
N
0.993
GL23648
Drosophila persimilis
FBgn0161238
N
1.000
GI22766
Drosophila mojavensis
FBgn0145493
N
0.993
GH17439
Drosophila grimshawi
FBgn0124909
N
0.978
GG11588
Drosophila erecta
FBgn0103885
N
0.993
GF18875
Drosophila ananassae
FBgn0095889
N
0.993
CG34362
Drosophila melanogaster
FBgn0085391
N
0.993
CG34354
Drosophila melanogaster
FBgn0085383
N
0.827
AGAP005292
Anopheles gambiae
AGAP005292
N
0.777
PHUM511750
Pediculus humanus
PHUM511750
N
0.777