CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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DGIL_AUG5s2018g1t1
(
Acyrtosiphon pisum
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
DGIL_AUG5s2018g1t1
T32040_0.6
DroSpeGe (2008-Jul-18)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
DGIL_AUG5s2018g1t1
RRM
121
186
IFVGDLSPEIETQTLREAFAPFGEISDCRVVRDPQTLKSKGYGFVSFLKKAEAESAIAAMNANTKP
DGIL_AUG5s2018g1t1
RRM
203
267
VYCGGLTSGLTDELVQKTFAPFGNIQEIRVFKDKGYAFVRFATKESATHAIVAVHNSDINGQPVK
Links
Other
RRM
family RBPs
Other
Acyrtosiphon pisum
RBPs
17 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PHUM511750
Pediculus humanus
PHUM511750
N
0.779
AGAP005292
Anopheles gambiae
AGAP005292
N
0.750
GD21364
Drosophila simulans
FBgn0192801
N
0.748
GE23777
Drosophila yakuba
FBgn0240933
N
0.748
GI22766
Drosophila mojavensis
FBgn0145493
N
0.748
GJ22768
Drosophila virilis
FBgn0209872
N
0.748
GM16370
Drosophila sechellia
FBgn0171285
N
0.748
CG34362
Drosophila melanogaster
FBgn0085391
N
0.748
GG11588
Drosophila erecta
FBgn0103885
N
0.748
GF18875
Drosophila ananassae
FBgn0095889
N
0.748
GA26680-RA
Drosophila pseudoobscura
FBgn0248053
N
0.741
GL23648
Drosophila persimilis
FBgn0161238
N
0.741
GH17439
Drosophila grimshawi
FBgn0124909
N
0.741
GK22641
Drosophila willistoni
FBgn0224618
N
0.734
CG34354
Drosophila melanogaster
FBgn0085383
N
0.706
GJ22770
Drosophila virilis
FBgn0209874
N
0.706
GD21365
Drosophila simulans
FBgn0192802
N
0.706