XM_002888447.1 (Arabidopsis lyrata)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgenesh2_kg.2__861__AT1G66260.1 T44510_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.2__861__AT1G66260.1 RRM 108 177

Links

Other RRM family RBPs
Other Arabidopsis lyrata RBPs

25 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PK16300.1 Cannabis sativa PK16300.1 N 0.757
cassava9473.m1 Manihot esculenta cassava9473.m1 N 0.771
Cucsa.137040 Cucumis sativus Cucsa.137040 N 0.729
Glyma11g33670.1 Glycine max Glyma11g33670.1 N 0.743
Glyma18g04530.1 Glycine max Glyma18g04530.1 N 0.729
mgf000319m Mimulus guttatus mgf000319m N 0.729
Medtr3g087640 Medicago truncatula Medtr3g087640 N 0.743
Medtr3g087650 Medicago truncatula Medtr3g087650 N 0.743
MDP0000202749 Malus x domestica MDP0000202749 N 0.771
MDP0000275263 Malus x domestica MDP0000275263 N 0.757
MDP0000299639 Malus x domestica MDP0000299639 N 0.757
cassava9472.m1 Manihot esculenta cassava9472.m1 N 0.771
cassava6246.valid.m1 Manihot esculenta cassava6246.valid.m1 N 0.771
cassava6245.valid.m1 Manihot esculenta cassava6245.valid.m1 N 0.771
AT1G66260 Arabidopsis thaliana AT1G66260-TAIR-G N 0.957
ALY4 Arabidopsis thaliana AT5G37720-TAIR-G N 0.829
XM_002870512.1 Arabidopsis lyrata fgenesh2_kg.7__3183__AT5G37720.2 N 0.829
GSVIVG00030785001 Vitis vinifera GSVIVG00030785001 N 0.757
B9H3A7_POPTR Populus trichocarpa POPTR_0004s08540 N 0.743
B9GUT0_POPTR Populus trichocarpa POPTR_0017s02890 N 0.729
29005.m000257 Ricinus communis 29005.m000257 N 0.714
cassava30010.valid.m1 Manihot esculenta cassava30010.valid.m1 N 0.771
cassava30011.valid.m1 Manihot esculenta cassava30011.valid.m1 N 0.771
cassava30012.valid.m1 Manihot esculenta cassava30012.valid.m1 N 0.771
ppa009623m Prunus persica ppa009623m N 0.771