cassava30010.valid.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava30010.valid.m1 T49272_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava30010.valid.m1 RRM 96 165

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

66 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava30012.valid.m1 Manihot esculenta cassava30012.valid.m1 N 1.000
cassava30011.valid.m1 Manihot esculenta cassava30011.valid.m1 N 1.000
cassava9472.m1 Manihot esculenta cassava9472.m1 N 0.971
cassava9473.m1 Manihot esculenta cassava9473.m1 N 0.971
cassava6245.valid.m1 Manihot esculenta cassava6245.valid.m1 N 0.971
cassava6246.valid.m1 Manihot esculenta cassava6246.valid.m1 N 0.971
ppa009623m Prunus persica ppa009623m N 0.929
MDP0000202749 Malus x domestica MDP0000202749 N 0.929
PK16300.1 Cannabis sativa PK16300.1 N 0.914
29005.m000257 Ricinus communis 29005.m000257 N 0.900
GSVIVG00030785001 Vitis vinifera GSVIVG00030785001 N 0.900
MDP0000275263 Malus x domestica MDP0000275263 N 0.886
B9GUT0_POPTR Populus trichocarpa POPTR_0017s02890 N 0.886
Glyma11g33670.1 Glycine max Glyma11g33670.1 N 0.886
MDP0000299639 Malus x domestica MDP0000299639 N 0.886
Cucsa.137040 Cucumis sativus Cucsa.137040 N 0.871
Medtr3g087640 Medicago truncatula Medtr3g087640 N 0.871
Medtr3g087650 Medicago truncatula Medtr3g087650 N 0.871
Glyma18g04530.1 Glycine max Glyma18g04530.1 N 0.871
B9H3A7_POPTR Populus trichocarpa POPTR_0004s08540 N 0.857
SB07G020860 Sorghum bicolor Sb07g020860 N 0.800
GRMZM2G171921 Zea mays GRMZM2G171921 N 0.800
ALY4 Arabidopsis thaliana AT5G37720-TAIR-G N 0.800
XM_002870512.1 Arabidopsis lyrata fgenesh2_kg.7__3183__AT5G37720.2 N 0.800
LOC_Os08g33120 Oryza sativa LOC_Os08g33120 N 0.786
BGIOSIBCE027930 Oryza indica BGIOSIBCE027930 N 0.786
AT1G66260 Arabidopsis thaliana AT1G66260-TAIR-G N 0.786
mgf000319m Mimulus guttatus mgf000319m N 0.786
XM_002888447.1 Arabidopsis lyrata fgenesh2_kg.2__861__AT1G66260.1 N 0.771
ppa010358m Prunus persica ppa010358m N 0.757
MDP0000251188 Malus x domestica MDP0000251188 N 0.743
MDP0000153894 Malus x domestica MDP0000153894 N 0.743
BRADI3G36320 Brachypodium distachyon BRADI3G36320 N 0.743
GSVIVG00025009001 Vitis vinifera GSVIVG00025009001 N 0.743
SB01G039330 Sorghum bicolor Sb01g039330 N 0.743
MDP0000119945 Malus x domestica MDP0000119945 N 0.743
Cucsa.172290 Cucumis sativus Cucsa.172290 N 0.743
cassava37746.valid.m1 Manihot esculenta cassava37746.valid.m1 N 0.743
cassava37747.valid.m1 Manihot esculenta cassava37747.valid.m1 N 0.743
XM_002873013.1 Arabidopsis lyrata fgenesh2_kg.6__165__AT5G02530.1 N 0.729
XM_002864614.1 Arabidopsis lyrata fgenesh2_kg.8__1946__AT5G59950.1 N 0.729
mgf010207m Mimulus guttatus mgf010207m N 0.729
BRADI4G45380 Brachypodium distachyon BRADI4G45380 N 0.729
AT5G59950 Arabidopsis thaliana AT5G59950-TAIR-G N 0.729
29876.m000260 Ricinus communis 29876.m000260 N 0.729
Medtr4g078540 Medicago truncatula Medtr4g078540 N 0.729
BGIOSIBCE021374 Oryza indica BGIOSIBCE021374 N 0.729
AT5G02530 Arabidopsis thaliana AT5G02530-TAIR-G N 0.729
LOC_Os06g14470 Oryza sativa LOC_Os06g14470 N 0.729
B9GER3_POPTR Populus trichocarpa POPTR_0001s24350 N 0.714
LOC_Os03g17010 Oryza sativa LOC_Os03g17010 N 0.714
B9NB27_POPTR Populus trichocarpa POPTR_0016s11470 N 0.714
BGIOSIBCE010579 Oryza indica BGIOSIBCE010579 N 0.714
Glyma11g15040.1 Glycine max Glyma11g15040.1 N 0.714
Cucsa.213420 Cucumis sativus Cucsa.213420 N 0.714
GRMZM2G166780 Zea mays GRMZM2G166780 N 0.714
GRMZM2G157329 Zea mays GRMZM2G157329 N 0.714
Glyma12g07010.1 Glycine max Glyma12g07010.1 N 0.714
cassava35480.valid.m1 Manihot esculenta cassava35480.valid.m1 N 0.700
BGIOSIBCE007269 Oryza indica BGIOSIBCE007269 N 0.700
LjT41B11.50.nd Lotus japonicus LjT41B11.50.nd N 0.700
Glyma13g40930.1 Glycine max Glyma13g40930.1 N 0.700
cassava6599.valid.m1 Manihot esculenta cassava6599.valid.m1 N 0.700
BGIOSIBCE007271 Oryza indica BGIOSIBCE007271 N 0.700
LOC_Os11g01020 Oryza sativa LOC_Os11g01020 N 0.700
LOC_Os12g01010 Oryza sativa LOC_Os12g01010 N 0.700