B9GUT0_POPTR (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0017s02890 T45682_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0017s02890.1 RRM 100 169
POPTR_0017s02890.2 RRM 100 169
POPTR_0017s02890.3 RRM 107 176

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

64 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava6246.valid.m1 Manihot esculenta cassava6246.valid.m1 N 0.914
cassava9473.m1 Manihot esculenta cassava9473.m1 N 0.914
cassava9472.m1 Manihot esculenta cassava9472.m1 N 0.914
cassava6245.valid.m1 Manihot esculenta cassava6245.valid.m1 N 0.914
B9H3A7_POPTR Populus trichocarpa POPTR_0004s08540 N 0.914
PK16300.1 Cannabis sativa PK16300.1 N 0.900
29005.m000257 Ricinus communis 29005.m000257 N 0.900
ppa009623m Prunus persica ppa009623m N 0.886
cassava30011.valid.m1 Manihot esculenta cassava30011.valid.m1 N 0.886
cassava30010.valid.m1 Manihot esculenta cassava30010.valid.m1 N 0.886
MDP0000202749 Malus x domestica MDP0000202749 N 0.886
cassava30012.valid.m1 Manihot esculenta cassava30012.valid.m1 N 0.886
MDP0000299639 Malus x domestica MDP0000299639 N 0.857
MDP0000275263 Malus x domestica MDP0000275263 N 0.857
Glyma11g33670.1 Glycine max Glyma11g33670.1 N 0.857
GSVIVG00030785001 Vitis vinifera GSVIVG00030785001 N 0.857
Medtr3g087640 Medicago truncatula Medtr3g087640 N 0.843
Glyma18g04530.1 Glycine max Glyma18g04530.1 N 0.843
Medtr3g087650 Medicago truncatula Medtr3g087650 N 0.843
Cucsa.137040 Cucumis sativus Cucsa.137040 N 0.843
GRMZM2G171921 Zea mays GRMZM2G171921 N 0.771
SB07G020860 Sorghum bicolor Sb07g020860 N 0.771
ppa010358m Prunus persica ppa010358m N 0.757
XM_002870512.1 Arabidopsis lyrata fgenesh2_kg.7__3183__AT5G37720.2 N 0.757
XM_002864614.1 Arabidopsis lyrata fgenesh2_kg.8__1946__AT5G59950.1 N 0.757
LOC_Os08g33120 Oryza sativa LOC_Os08g33120 N 0.757
mgf010207m Mimulus guttatus mgf010207m N 0.757
BGIOSIBCE027930 Oryza indica BGIOSIBCE027930 N 0.757
AT1G66260 Arabidopsis thaliana AT1G66260-TAIR-G N 0.757
AT5G59950 Arabidopsis thaliana AT5G59950-TAIR-G N 0.757
ALY4 Arabidopsis thaliana AT5G37720-TAIR-G N 0.757
BRADI4G45380 Brachypodium distachyon BRADI4G45380 N 0.743
GSVIVG00025009001 Vitis vinifera GSVIVG00025009001 N 0.743
MDP0000119945 Malus x domestica MDP0000119945 N 0.743
cassava37747.valid.m1 Manihot esculenta cassava37747.valid.m1 N 0.743
Cucsa.172290 Cucumis sativus Cucsa.172290 N 0.743
Glyma12g07010.1 Glycine max Glyma12g07010.1 N 0.743
MDP0000251188 Malus x domestica MDP0000251188 N 0.743
Glyma11g15040.1 Glycine max Glyma11g15040.1 N 0.743
mgf000319m Mimulus guttatus mgf000319m N 0.743
cassava37746.valid.m1 Manihot esculenta cassava37746.valid.m1 N 0.743
MDP0000153894 Malus x domestica MDP0000153894 N 0.743
XM_002888447.1 Arabidopsis lyrata fgenesh2_kg.2__861__AT1G66260.1 N 0.729
SB01G039330 Sorghum bicolor Sb01g039330 N 0.729
29876.m000260 Ricinus communis 29876.m000260 N 0.729
XM_002873013.1 Arabidopsis lyrata fgenesh2_kg.6__165__AT5G02530.1 N 0.729
BRADI3G36320 Brachypodium distachyon BRADI3G36320 N 0.729
AT5G02530 Arabidopsis thaliana AT5G02530-TAIR-G N 0.729
Medtr4g078540 Medicago truncatula Medtr4g078540 N 0.729
Glyma13g40930.1 Glycine max Glyma13g40930.1 N 0.714
BGIOSIBCE021374 Oryza indica BGIOSIBCE021374 N 0.714
B9GER3_POPTR Populus trichocarpa POPTR_0001s24350 N 0.714
LOC_Os06g14470 Oryza sativa LOC_Os06g14470 N 0.714
Cucsa.213420 Cucumis sativus Cucsa.213420 N 0.714
GRMZM2G166780 Zea mays GRMZM2G166780 N 0.700
LOC_Os12g01010 Oryza sativa LOC_Os12g01010 N 0.700
LOC_Os11g01020 Oryza sativa LOC_Os11g01020 N 0.700
GRMZM2G157329 Zea mays GRMZM2G157329 N 0.700
BGIOSIBCE010579 Oryza indica BGIOSIBCE010579 N 0.700
BGIOSIBCE007271 Oryza indica BGIOSIBCE007271 N 0.700
BGIOSIBCE007269 Oryza indica BGIOSIBCE007269 N 0.700
cassava35480.valid.m1 Manihot esculenta cassava35480.valid.m1 N 0.700
LOC_Os03g17010 Oryza sativa LOC_Os03g17010 N 0.700