29005.m000257 (Ricinus communis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 29005.m000257 T48644_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
29005.m000257 RRM 97 166

Links

Other RRM family RBPs
Other Ricinus communis RBPs

62 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava6246.valid.m1 Manihot esculenta cassava6246.valid.m1 N 0.929
cassava9472.m1 Manihot esculenta cassava9472.m1 N 0.929
cassava6245.valid.m1 Manihot esculenta cassava6245.valid.m1 N 0.929
cassava9473.m1 Manihot esculenta cassava9473.m1 N 0.929
cassava30011.valid.m1 Manihot esculenta cassava30011.valid.m1 N 0.900
cassava30010.valid.m1 Manihot esculenta cassava30010.valid.m1 N 0.900
cassava30012.valid.m1 Manihot esculenta cassava30012.valid.m1 N 0.900
B9H3A7_POPTR Populus trichocarpa POPTR_0004s08540 N 0.900
B9GUT0_POPTR Populus trichocarpa POPTR_0017s02890 N 0.900
MDP0000202749 Malus x domestica MDP0000202749 N 0.871
ppa009623m Prunus persica ppa009623m N 0.871
PK16300.1 Cannabis sativa PK16300.1 N 0.871
GSVIVG00030785001 Vitis vinifera GSVIVG00030785001 N 0.843
Medtr3g087650 Medicago truncatula Medtr3g087650 N 0.843
Medtr3g087640 Medicago truncatula Medtr3g087640 N 0.843
MDP0000275263 Malus x domestica MDP0000275263 N 0.843
MDP0000299639 Malus x domestica MDP0000299639 N 0.843
Cucsa.137040 Cucumis sativus Cucsa.137040 N 0.829
Glyma18g04530.1 Glycine max Glyma18g04530.1 N 0.829
Glyma11g33670.1 Glycine max Glyma11g33670.1 N 0.829
GRMZM2G171921 Zea mays GRMZM2G171921 N 0.757
mgf000319m Mimulus guttatus mgf000319m N 0.757
SB07G020860 Sorghum bicolor Sb07g020860 N 0.757
ppa010358m Prunus persica ppa010358m N 0.743
LOC_Os08g33120 Oryza sativa LOC_Os08g33120 N 0.743
AT1G66260 Arabidopsis thaliana AT1G66260-TAIR-G N 0.743
ALY4 Arabidopsis thaliana AT5G37720-TAIR-G N 0.743
BGIOSIBCE021374 Oryza indica BGIOSIBCE021374 N 0.743
LOC_Os06g14470 Oryza sativa LOC_Os06g14470 N 0.743
29876.m000260 Ricinus communis 29876.m000260 N 0.743
mgf010207m Mimulus guttatus mgf010207m N 0.743
XM_002870512.1 Arabidopsis lyrata fgenesh2_kg.7__3183__AT5G37720.2 N 0.743
BGIOSIBCE027930 Oryza indica BGIOSIBCE027930 N 0.743
AT5G59950 Arabidopsis thaliana AT5G59950-TAIR-G N 0.729
GSVIVG00025009001 Vitis vinifera GSVIVG00025009001 N 0.729
BRADI4G45380 Brachypodium distachyon BRADI4G45380 N 0.729
B9GER3_POPTR Populus trichocarpa POPTR_0001s24350 N 0.729
SB01G039330 Sorghum bicolor Sb01g039330 N 0.729
XM_002864614.1 Arabidopsis lyrata fgenesh2_kg.8__1946__AT5G59950.1 N 0.729
MDP0000251188 Malus x domestica MDP0000251188 N 0.729
MDP0000119945 Malus x domestica MDP0000119945 N 0.729
cassava37746.valid.m1 Manihot esculenta cassava37746.valid.m1 N 0.729
Cucsa.172290 Cucumis sativus Cucsa.172290 N 0.729
cassava37747.valid.m1 Manihot esculenta cassava37747.valid.m1 N 0.729
Glyma12g07010.1 Glycine max Glyma12g07010.1 N 0.729
Glyma11g15040.1 Glycine max Glyma11g15040.1 N 0.729
MDP0000153894 Malus x domestica MDP0000153894 N 0.729
Medtr4g078540 Medicago truncatula Medtr4g078540 N 0.714
XM_002873013.1 Arabidopsis lyrata fgenesh2_kg.6__165__AT5G02530.1 N 0.714
AT5G02530 Arabidopsis thaliana AT5G02530-TAIR-G N 0.714
BRADI3G36320 Brachypodium distachyon BRADI3G36320 N 0.714
XM_002888447.1 Arabidopsis lyrata fgenesh2_kg.2__861__AT1G66260.1 N 0.714
SB10G009240 Sorghum bicolor Sb10g009240 N 0.700
B9NB27_POPTR Populus trichocarpa POPTR_0016s11470 N 0.700
cassava35480.valid.m1 Manihot esculenta cassava35480.valid.m1 N 0.700
GRMZM2G157329 Zea mays GRMZM2G157329 N 0.700
GRMZM2G166780 Zea mays GRMZM2G166780 N 0.700
BRADI1G44147 Brachypodium distachyon BRADI1G44147 N 0.700
BGIOSIBCE010579 Oryza indica BGIOSIBCE010579 N 0.700
Glyma13g40930.1 Glycine max Glyma13g40930.1 N 0.700
LOC_Os03g17010 Oryza sativa LOC_Os03g17010 N 0.700
Cucsa.213420 Cucumis sativus Cucsa.213420 N 0.700