cassava9473.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava9473.m1 T49488_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava9473.m1 RRM 96 165

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

68 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava6246.valid.m1 Manihot esculenta cassava6246.valid.m1 N 1.000
cassava6245.valid.m1 Manihot esculenta cassava6245.valid.m1 N 1.000
cassava9472.m1 Manihot esculenta cassava9472.m1 N 1.000
cassava30012.valid.m1 Manihot esculenta cassava30012.valid.m1 N 0.971
cassava30011.valid.m1 Manihot esculenta cassava30011.valid.m1 N 0.971
cassava30010.valid.m1 Manihot esculenta cassava30010.valid.m1 N 0.971
PK16300.1 Cannabis sativa PK16300.1 N 0.943
ppa009623m Prunus persica ppa009623m N 0.943
MDP0000202749 Malus x domestica MDP0000202749 N 0.943
29005.m000257 Ricinus communis 29005.m000257 N 0.929
B9GUT0_POPTR Populus trichocarpa POPTR_0017s02890 N 0.914
GSVIVG00030785001 Vitis vinifera GSVIVG00030785001 N 0.914
MDP0000275263 Malus x domestica MDP0000275263 N 0.900
Glyma11g33670.1 Glycine max Glyma11g33670.1 N 0.900
Cucsa.137040 Cucumis sativus Cucsa.137040 N 0.900
MDP0000299639 Malus x domestica MDP0000299639 N 0.900
Medtr3g087650 Medicago truncatula Medtr3g087650 N 0.886
Glyma18g04530.1 Glycine max Glyma18g04530.1 N 0.886
Medtr3g087640 Medicago truncatula Medtr3g087640 N 0.886
B9H3A7_POPTR Populus trichocarpa POPTR_0004s08540 N 0.886
XM_002870512.1 Arabidopsis lyrata fgenesh2_kg.7__3183__AT5G37720.2 N 0.814
GRMZM2G171921 Zea mays GRMZM2G171921 N 0.814
SB07G020860 Sorghum bicolor Sb07g020860 N 0.814
ALY4 Arabidopsis thaliana AT5G37720-TAIR-G N 0.814
LOC_Os08g33120 Oryza sativa LOC_Os08g33120 N 0.800
mgf000319m Mimulus guttatus mgf000319m N 0.800
BGIOSIBCE027930 Oryza indica BGIOSIBCE027930 N 0.800
AT1G66260 Arabidopsis thaliana AT1G66260-TAIR-G N 0.786
ppa010358m Prunus persica ppa010358m N 0.771
XM_002888447.1 Arabidopsis lyrata fgenesh2_kg.2__861__AT1G66260.1 N 0.771
BRADI3G36320 Brachypodium distachyon BRADI3G36320 N 0.757
BRADI4G45380 Brachypodium distachyon BRADI4G45380 N 0.757
MDP0000251188 Malus x domestica MDP0000251188 N 0.757
cassava37746.valid.m1 Manihot esculenta cassava37746.valid.m1 N 0.757
Cucsa.172290 Cucumis sativus Cucsa.172290 N 0.757
SB01G039330 Sorghum bicolor Sb01g039330 N 0.757
MDP0000119945 Malus x domestica MDP0000119945 N 0.757
GSVIVG00025009001 Vitis vinifera GSVIVG00025009001 N 0.757
MDP0000153894 Malus x domestica MDP0000153894 N 0.757
cassava37747.valid.m1 Manihot esculenta cassava37747.valid.m1 N 0.757
29876.m000260 Ricinus communis 29876.m000260 N 0.743
LOC_Os06g14470 Oryza sativa LOC_Os06g14470 N 0.743
BGIOSIBCE021374 Oryza indica BGIOSIBCE021374 N 0.743
AT5G02530 Arabidopsis thaliana AT5G02530-TAIR-G N 0.743
mgf010207m Mimulus guttatus mgf010207m N 0.743
XM_002873013.1 Arabidopsis lyrata fgenesh2_kg.6__165__AT5G02530.1 N 0.743
Medtr4g078540 Medicago truncatula Medtr4g078540 N 0.743
AT5G59950 Arabidopsis thaliana AT5G59950-TAIR-G N 0.729
GRMZM2G157329 Zea mays GRMZM2G157329 N 0.729
Glyma11g15040.1 Glycine max Glyma11g15040.1 N 0.729
XM_002864614.1 Arabidopsis lyrata fgenesh2_kg.8__1946__AT5G59950.1 N 0.729
BGIOSIBCE010579 Oryza indica BGIOSIBCE010579 N 0.729
Glyma12g07010.1 Glycine max Glyma12g07010.1 N 0.729
LOC_Os03g17010 Oryza sativa LOC_Os03g17010 N 0.729
GRMZM2G166780 Zea mays GRMZM2G166780 N 0.729
B9NB27_POPTR Populus trichocarpa POPTR_0016s11470 N 0.729
Cucsa.213420 Cucumis sativus Cucsa.213420 N 0.729
Glyma13g40930.1 Glycine max Glyma13g40930.1 N 0.714
cassava35480.valid.m1 Manihot esculenta cassava35480.valid.m1 N 0.714
BGIOSIBCE007269 Oryza indica BGIOSIBCE007269 N 0.714
LOC_Os11g01020 Oryza sativa LOC_Os11g01020 N 0.714
LOC_Os12g01010 Oryza sativa LOC_Os12g01010 N 0.714
B9GER3_POPTR Populus trichocarpa POPTR_0001s24350 N 0.714
BGIOSIBCE007271 Oryza indica BGIOSIBCE007271 N 0.714
cassava6599.valid.m1 Manihot esculenta cassava6599.valid.m1 N 0.700
SB10G009240 Sorghum bicolor Sb10g009240 N 0.700
BRADI1G44147 Brachypodium distachyon BRADI1G44147 N 0.700
LjT41B11.50.nd Lotus japonicus LjT41B11.50.nd N 0.700