GSVIVG00021379001 (Vitis vinifera)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 GSVIVG00021379001 T44700_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
GSVIVT00021379001 RRM 218 283
GSVIVT00021379001 RRM 303 368
GSVIVT00021379001 RRM 626 697

Links

Other RRM family RBPs
Other Vitis vinifera RBPs

71 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa001327m Prunus persica ppa001327m N 0.961
Glyma08g42230.1 Glycine max Glyma08g42230.1 N 0.956
Glyma08g01040.1 Glycine max Glyma08g01040.1 N 0.784
estExt_gwp_gw1.C_780034 Physcomitrella patens estExt_gwp_gw1.C_780034 N 0.926
estExt_fgenesh2_pg.C_120305 Selaginella moellendorfii estExt_fgenesh2_pg.C_120305 N 0.897
e_gw1.78.82.1 Physcomitrella patens e_gw1.78.82.1 N 0.926
e_gw1.271.39.1 Physcomitrella patens e_gw1.271.39.1 N 0.931
e_gw1.12.24.1 Selaginella moellendorfii e_gw1.12.24.1 N 0.892
Cucsa.349210 Cucumis sativus Cucsa.349210 N 0.873
Cucsa.185450 Cucumis sativus Cucsa.185450 N 0.937
Cucsa.047430 Cucumis sativus Cucsa.047430 N 0.907
cassava6429.valid.m1 Manihot esculenta cassava6429.valid.m1 N 0.971
cassava44897.m1 Manihot esculenta cassava44897.m1 N 0.966
cassava42355.valid.m1 Manihot esculenta cassava42355.valid.m1 N 0.966
cassava42354.valid.m1 Manihot esculenta cassava42354.valid.m1 N 0.966
cassava42353.valid.m1 Manihot esculenta cassava42353.valid.m1 N 0.966
Glyma09g11630.1 Glycine max Glyma09g11630.1 N 0.936
Glyma15g23420.1 Glycine max Glyma15g23420.1 N 0.956
Glyma18g12730.1 Glycine max Glyma18g12730.1 N 0.961
ppa001307m Prunus persica ppa001307m N 0.946
ppa000997m Prunus persica ppa000997m N 0.819
ppa000845m Prunus persica ppa000845m N 0.868
chr6.CM0037.1500.nc Lotus japonicus chr6.CM0037.1500.nc N 0.931
Medtr3g151260 Medicago truncatula Medtr3g151260 N 0.755
Medtr2g056620 Medicago truncatula Medtr2g056620 N 0.941
GRMZM2G451716 Zea mays GRMZM2G451716 N 0.716
GRMZM2G154229 Zea mays GRMZM2G154229 N 0.907
GRMZM2G012302 Zea mays GRMZM2G012302 N 0.815
GRMZM2G004455 Zea mays GRMZM2G004455 N 0.902
mgf023970m Mimulus guttatus mgf023970m N 0.872
mgf015667m Mimulus guttatus mgf015667m N 0.863
mgf014747m Mimulus guttatus mgf014747m N 0.912
mgf005765m Mimulus guttatus mgf005765m N 0.912
mgf000415m Mimulus guttatus mgf000415m N 0.863
cassava42352.valid.m1 Manihot esculenta cassava42352.valid.m1 N 0.966
cassava37262.valid.m1 Manihot esculenta cassava37262.valid.m1 N 0.755
cassava37261.valid.m1 Manihot esculenta cassava37261.valid.m1 N 0.755
GSVIVG00001086001 Vitis vinifera GSVIVG00001086001 N 0.902
XM_002870025.1 Arabidopsis lyrata fgenesh2_kg.7__2489__AT4G18120.1 N 0.760
BRADI5G08580 Brachypodium distachyon BRADI5G08580 N 0.750
BRADI3G44380 Brachypodium distachyon BRADI3G44380 N 0.843
BRADI3G10967 Brachypodium distachyon BRADI3G10967 N 0.814
BRADI1G52280 Brachypodium distachyon BRADI1G52280 N 0.897
BGIOSIBCE008451 Oryza indica BGIOSIBCE008451 N 0.878
BGIOSIBCE007174 Oryza indica BGIOSIBCE007174 N 0.819
BGIOSIBCE006715 Oryza indica BGIOSIBCE006715 N 0.804
ML2 Arabidopsis thaliana AT2G42890-TAIR-G N 0.740
ML5 Arabidopsis thaliana AT1G29400-TAIR-G N 0.873
XM_002893514.1 Arabidopsis lyrata Al_scaffold_0001_2998 N 0.868
PK25465.1 Cannabis sativa PK25465.1 N 0.951
PK24656.1 Cannabis sativa PK24656.1 N 0.941
PK19379.1 Cannabis sativa PK19379.1 N 0.804
GSVIVG00008646001 Vitis vinifera GSVIVG00008646001 N 0.922
LOC_Os02g21430 Oryza sativa LOC_Os02g21430 N 0.804
LOC_Os02g31290 Oryza sativa LOC_Os02g31290 N 0.819
cassava13648.valid.m1 Manihot esculenta cassava13648.valid.m1 N 0.794
cassava13647.valid.m1 Manihot esculenta cassava13647.valid.m1 N 0.794
cassava12910.valid.m1 Manihot esculenta cassava12910.valid.m1 N 0.838
30147.m014409 Ricinus communis 30147.m014409 N 0.863
29693.m002077 Ricinus communis 29693.m002077 N 0.931
28350.m000106 Ricinus communis 28350.m000106 N 0.936
SB10G000350 Sorghum bicolor Sb10g000350 N 0.907
SB06G014670 Sorghum bicolor Sb06g014670 N 0.706
SB04G021130 Sorghum bicolor Sb04g021130 N 0.834
B9I403_POPTR Populus trichocarpa POPTR_0012s10900 N 0.814
B9H813_POPTR Populus trichocarpa POPTR_0005s22370 N 0.931
B9GZ23_POPTR Populus trichocarpa POPTR_0003s16110 N 0.828
B9GT36_POPTR Populus trichocarpa POPTR_0002s06070 N 0.936
B9GMT5_POPTR Populus trichocarpa POPTR_0001s13030 N 0.844
LOC_Os02g48790 Oryza sativa LOC_Os02g48790 N 0.878
PK15886.1 Cannabis sativa PK15886.1 N 0.868