LOC_Os02g31290 (Oryza sativa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 LOC_Os02g31290 T44962_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os02g31290.1 RRM 277 342
LOC_Os02g31290.1 RRM 362 427
LOC_Os02g31290.1 RRM 832 903
LOC_Os02g31290.2 RRM 277 342
LOC_Os02g31290.2 RRM 362 427
LOC_Os02g31290.2 RRM 832 903

Links

Other RRM family RBPs
Other Oryza sativa RBPs

70 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa001327m Prunus persica ppa001327m N 0.824
Glyma08g42230.1 Glycine max Glyma08g42230.1 N 0.819
Glyma08g01040.1 Glycine max Glyma08g01040.1 N 0.745
estExt_gwp_gw1.C_780034 Physcomitrella patens estExt_gwp_gw1.C_780034 N 0.799
estExt_fgenesh2_pg.C_120305 Selaginella moellendorfii estExt_fgenesh2_pg.C_120305 N 0.809
e_gw1.78.82.1 Physcomitrella patens e_gw1.78.82.1 N 0.799
e_gw1.271.39.1 Physcomitrella patens e_gw1.271.39.1 N 0.814
e_gw1.12.24.1 Selaginella moellendorfii e_gw1.12.24.1 N 0.819
Cucsa.349210 Cucumis sativus Cucsa.349210 N 0.799
Cucsa.185450 Cucumis sativus Cucsa.185450 N 0.810
Cucsa.047430 Cucumis sativus Cucsa.047430 N 0.799
cassava6429.valid.m1 Manihot esculenta cassava6429.valid.m1 N 0.804
cassava44897.m1 Manihot esculenta cassava44897.m1 N 0.814
cassava42355.valid.m1 Manihot esculenta cassava42355.valid.m1 N 0.814
cassava42354.valid.m1 Manihot esculenta cassava42354.valid.m1 N 0.814
cassava42353.valid.m1 Manihot esculenta cassava42353.valid.m1 N 0.814
Glyma09g11630.1 Glycine max Glyma09g11630.1 N 0.799
Glyma15g23420.1 Glycine max Glyma15g23420.1 N 0.809
Glyma18g12730.1 Glycine max Glyma18g12730.1 N 0.819
ppa001307m Prunus persica ppa001307m N 0.814
ppa000997m Prunus persica ppa000997m N 0.789
ppa000845m Prunus persica ppa000845m N 0.794
chr6.CM0037.1500.nc Lotus japonicus chr6.CM0037.1500.nc N 0.814
Medtr3g151260 Medicago truncatula Medtr3g151260 N 0.706
Medtr2g056620 Medicago truncatula Medtr2g056620 N 0.799
GRMZM2G451716 Zea mays GRMZM2G451716 N 0.721
GRMZM2G154229 Zea mays GRMZM2G154229 N 0.784
GRMZM2G012302 Zea mays GRMZM2G012302 N 0.859
GRMZM2G004455 Zea mays GRMZM2G004455 N 0.789
mgf023970m Mimulus guttatus mgf023970m N 0.748
mgf015667m Mimulus guttatus mgf015667m N 0.828
mgf014747m Mimulus guttatus mgf014747m N 0.810
mgf005765m Mimulus guttatus mgf005765m N 0.824
mgf000415m Mimulus guttatus mgf000415m N 0.828
cassava42352.valid.m1 Manihot esculenta cassava42352.valid.m1 N 0.814
cassava37262.valid.m1 Manihot esculenta cassava37262.valid.m1 N 0.711
GSVIVG00021379001 Vitis vinifera GSVIVG00021379001 N 0.819
GSVIVG00008646001 Vitis vinifera GSVIVG00008646001 N 0.824
GSVIVG00001086001 Vitis vinifera GSVIVG00001086001 N 0.833
BRADI5G08580 Brachypodium distachyon BRADI5G08580 N 0.716
BRADI3G44380 Brachypodium distachyon BRADI3G44380 N 0.897
BRADI3G10967 Brachypodium distachyon BRADI3G10967 N 0.750
BRADI1G52280 Brachypodium distachyon BRADI1G52280 N 0.794
BGIOSIBCE008451 Oryza indica BGIOSIBCE008451 N 0.771
BGIOSIBCE007174 Oryza indica BGIOSIBCE007174 N 1.000
BGIOSIBCE006715 Oryza indica BGIOSIBCE006715 N 0.721
ML5 Arabidopsis thaliana AT1G29400-TAIR-G N 0.799
XM_002893514.1 Arabidopsis lyrata Al_scaffold_0001_2998 N 0.794
PK25465.1 Cannabis sativa PK25465.1 N 0.819
PK24656.1 Cannabis sativa PK24656.1 N 0.824
PK19379.1 Cannabis sativa PK19379.1 N 0.730
LOC_Os02g21430 Oryza sativa LOC_Os02g21430 N 0.721
LOC_Os02g48790 Oryza sativa LOC_Os02g48790 N 0.771
cassava37261.valid.m1 Manihot esculenta cassava37261.valid.m1 N 0.711
cassava13648.valid.m1 Manihot esculenta cassava13648.valid.m1 N 0.755
cassava13647.valid.m1 Manihot esculenta cassava13647.valid.m1 N 0.755
cassava12910.valid.m1 Manihot esculenta cassava12910.valid.m1 N 0.794
30147.m014409 Ricinus communis 30147.m014409 N 0.809
29693.m002077 Ricinus communis 29693.m002077 N 0.809
28350.m000106 Ricinus communis 28350.m000106 N 0.824
SB10G000350 Sorghum bicolor Sb10g000350 N 0.794
SB06G014670 Sorghum bicolor Sb06g014670 N 0.716
SB04G021130 Sorghum bicolor Sb04g021130 N 0.878
B9I403_POPTR Populus trichocarpa POPTR_0012s10900 N 0.779
B9H813_POPTR Populus trichocarpa POPTR_0005s22370 N 0.809
B9GZ23_POPTR Populus trichocarpa POPTR_0003s16110 N 0.755
B9GT36_POPTR Populus trichocarpa POPTR_0002s06070 N 0.814
B9GMT5_POPTR Populus trichocarpa POPTR_0001s13030 N 0.776
PK15886.1 Cannabis sativa PK15886.1 N 0.819