B9I403_POPTR (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0012s10900 T45631_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0012s10900.1 RRM 247 312
POPTR_0012s10900.1 RRM 332 397
POPTR_0012s10900.1 RRM 775 846

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

68 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa001327m Prunus persica ppa001327m N 0.814
Glyma09g11630.1 Glycine max Glyma09g11630.1 N 0.794
Glyma08g42230.1 Glycine max Glyma08g42230.1 N 0.814
Glyma08g01040.1 Glycine max Glyma08g01040.1 N 0.789
estExt_gwp_gw1.C_780034 Physcomitrella patens estExt_gwp_gw1.C_780034 N 0.824
estExt_fgenesh2_pg.C_120305 Selaginella moellendorfii estExt_fgenesh2_pg.C_120305 N 0.809
e_gw1.78.82.1 Physcomitrella patens e_gw1.78.82.1 N 0.824
e_gw1.271.39.1 Physcomitrella patens e_gw1.271.39.1 N 0.828
e_gw1.12.24.1 Selaginella moellendorfii e_gw1.12.24.1 N 0.809
Cucsa.349210 Cucumis sativus Cucsa.349210 N 0.863
Cucsa.185450 Cucumis sativus Cucsa.185450 N 0.815
Cucsa.047430 Cucumis sativus Cucsa.047430 N 0.809
cassava6429.valid.m1 Manihot esculenta cassava6429.valid.m1 N 0.809
cassava44897.m1 Manihot esculenta cassava44897.m1 N 0.804
cassava42355.valid.m1 Manihot esculenta cassava42355.valid.m1 N 0.804
cassava42354.valid.m1 Manihot esculenta cassava42354.valid.m1 N 0.804
Glyma15g23420.1 Glycine max Glyma15g23420.1 N 0.814
Glyma18g12730.1 Glycine max Glyma18g12730.1 N 0.819
ppa001307m Prunus persica ppa001307m N 0.814
ppa000997m Prunus persica ppa000997m N 0.814
ppa000845m Prunus persica ppa000845m N 0.843
chr6.CM0037.1500.nc Lotus japonicus chr6.CM0037.1500.nc N 0.809
Medtr3g151260 Medicago truncatula Medtr3g151260 N 0.755
Medtr2g056620 Medicago truncatula Medtr2g056620 N 0.794
GRMZM2G451716 Zea mays GRMZM2G451716 N 0.721
GRMZM2G154229 Zea mays GRMZM2G154229 N 0.789
GRMZM2G012302 Zea mays GRMZM2G012302 N 0.761
GRMZM2G004455 Zea mays GRMZM2G004455 N 0.779
mgf023970m Mimulus guttatus mgf023970m N 0.748
mgf015667m Mimulus guttatus mgf015667m N 0.843
mgf014747m Mimulus guttatus mgf014747m N 0.800
mgf005765m Mimulus guttatus mgf005765m N 0.805
mgf000415m Mimulus guttatus mgf000415m N 0.843
cassava42353.valid.m1 Manihot esculenta cassava42353.valid.m1 N 0.804
cassava42352.valid.m1 Manihot esculenta cassava42352.valid.m1 N 0.804
LOC_Os02g21430 Oryza sativa LOC_Os02g21430 N 0.711
GSVIVG00021379001 Vitis vinifera GSVIVG00021379001 N 0.814
GSVIVG00008646001 Vitis vinifera GSVIVG00008646001 N 0.843
GSVIVG00001086001 Vitis vinifera GSVIVG00001086001 N 0.853
BRADI3G44380 Brachypodium distachyon BRADI3G44380 N 0.794
BRADI3G10967 Brachypodium distachyon BRADI3G10967 N 0.721
BRADI1G52280 Brachypodium distachyon BRADI1G52280 N 0.775
BGIOSIBCE008451 Oryza indica BGIOSIBCE008451 N 0.761
BGIOSIBCE007174 Oryza indica BGIOSIBCE007174 N 0.779
BGIOSIBCE006715 Oryza indica BGIOSIBCE006715 N 0.711
ML5 Arabidopsis thaliana AT1G29400-TAIR-G N 0.794
XM_002893514.1 Arabidopsis lyrata Al_scaffold_0001_2998 N 0.799
PK25465.1 Cannabis sativa PK25465.1 N 0.843
PK24656.1 Cannabis sativa PK24656.1 N 0.819
PK19379.1 Cannabis sativa PK19379.1 N 0.770
LOC_Os02g31290 Oryza sativa LOC_Os02g31290 N 0.779
LOC_Os02g48790 Oryza sativa LOC_Os02g48790 N 0.761
cassava37262.valid.m1 Manihot esculenta cassava37262.valid.m1 N 0.779
cassava37261.valid.m1 Manihot esculenta cassava37261.valid.m1 N 0.779
cassava13648.valid.m1 Manihot esculenta cassava13648.valid.m1 N 0.799
cassava13647.valid.m1 Manihot esculenta cassava13647.valid.m1 N 0.799
cassava12910.valid.m1 Manihot esculenta cassava12910.valid.m1 N 0.833
30147.m014409 Ricinus communis 30147.m014409 N 0.902
29693.m002077 Ricinus communis 29693.m002077 N 0.794
28350.m000106 Ricinus communis 28350.m000106 N 0.814
SB10G000350 Sorghum bicolor Sb10g000350 N 0.789
SB06G014670 Sorghum bicolor Sb06g014670 N 0.711
SB04G021130 Sorghum bicolor Sb04g021130 N 0.761
B9H813_POPTR Populus trichocarpa POPTR_0005s22370 N 0.799
B9GZ23_POPTR Populus trichocarpa POPTR_0003s16110 N 0.799
B9GT36_POPTR Populus trichocarpa POPTR_0002s06070 N 0.804
B9GMT5_POPTR Populus trichocarpa POPTR_0001s13030 N 0.815
PK15886.1 Cannabis sativa PK15886.1 N 0.843