185543 (Helobdella robusta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 185543 T48584_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
U2AF2
M077_0.6 		Homo sapiens UUUUUYC RNAcompete
Ray et al.(2013)
RNCMPT00079 		0.787
U2af50
M078_0.6 		Drosophila melanogaster UUUUUYY RNAcompete
Ray et al.(2013)
RNCMPT00080 		0.735
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
185543 RRM 128 202
185543 RRM 242 312
185543 RRM 373 437

Links

Other RRM family RBPs
Other Helobdella robusta RBPs

50 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
U2AF2 Homo sapiens ENSG00000063244 D 0.787
U2af50 Drosophila melanogaster FBgn0005411 D 0.735
AAH44032 Xenopus laevis AAH44032 I 0.782
GH12033 Drosophila grimshawi FBgn0119512 I 0.725
GG19328 Drosophila erecta FBgn0111532 I 0.735
GF19596 Drosophila ananassae FBgn0096603 I 0.735
GA22177-RA Drosophila pseudoobscura FBgn0082156 I 0.735
u2af2 Xenopus tropicalis ENSXETG00000019128 I 0.782
U2AF2 Tursiops truncatus ENSTTRG00000000987 I 0.787
ENSTRUG00000006885 Takifugu rubripes ENSTRUG00000006885 I 0.763
U2AF2 Takifugu rubripes ENSTRUG00000005514 I 0.763
GI14308 Drosophila mojavensis FBgn0137061 I 0.725
GL15893 Drosophila persimilis FBgn0153497 I 0.735
GM13406 Drosophila sechellia FBgn0168337 I 0.735
Smp_019690 Schistosoma mansoni Smp_019690 I 0.706
Ame_R015025 Ailuropoda melanoleuca Ame_R015025 I 0.787
BGIBMGA007082 Bombyx mori BGIBMGA007082 I 0.730
fgenesh1_pm.scaffold_8000042 Nematostella vectensis fgenesh1_pm.scaffold_8000042 I 0.712
estExt_Genewise1.C_sca_340148 Lottia gigantea estExt_Genewise1.C_sca_340148 I 0.773
estExt_Genewise1.C_1170024 Capitella teleta estExt_Genewise1.C_1170024 I 0.796
PHUM460480 Pediculus humanus PHUM460480 I 0.730
GE15975 Drosophila yakuba FBgn0233531 I 0.735
GK10063 Drosophila willistoni FBgn0212078 I 0.735
GD24494 Drosophila simulans FBgn0195829 I 0.735
ENSTNIG00000011257 Tetraodon nigroviridis ENSTNIG00000011257 I 0.758
U2AF2 Tetraodon nigroviridis ENSTNIG00000008106 I 0.768
U2AF2 Canis familiaris ENSCAFG00000002551 I 0.782
Q24JZ8_BOVIN Bos taurus ENSBTAG00000002830 I 0.782
U2AF2 Anolis carolinensis ENSACAG00000015489 I 0.787
CPIJ012850 Culex quinquefasciatus CPIJ012850 I 0.730
AGAP002908 Anopheles gambiae AGAP002908 I 0.730
AAEL002818 Aedes aegypti AAEL002818 I 0.730
nasonia_NCBI_hmm415104 Nasonia vitripennis nasonia_NCBI_hmm415104 I 0.739
DGIL_AUG5s6719g2t1 Acyrtosiphon pisum DGIL_AUG5s6719g2t1 I 0.725
DGIL_AUG5s4302g1t1 Acyrtosiphon pisum DGIL_AUG5s4302g1t1 I 0.730
amel4_ncbi_hmm5234 Apis mellifera amel4_ncbi_hmm5234 I 0.735
U2AF2 Cavia porcellus ENSCPOG00000001582 I 0.787
u2af2b Danio rerio ENSDARG00000011740 I 0.754
LOC690372 Rattus norvegicus ENSRNOG00000015914 I 0.787
U2AF2 Pteropus vampyrus ENSPVAG00000004540 I 0.782
U2AF2 Oryzias latipes ENSORLG00000011545 I 0.768
U2af2 Mus musculus ENSMUSG00000030435 I 0.787
ENSMMUG00000004810 Macaca mulatta ENSMMUG00000004810 I 0.787
ENSLAFG00000018056 Loxodonta africana ENSLAFG00000018056 I 0.787
ENSGACG00000014500 Gasterosteus aculeatus ENSGACG00000014500 I 0.773
U2AF2 Gasterosteus aculeatus ENSGACG00000010632 I 0.768
LOC100050729 Equus caballus ENSECAG00000010110 I 0.787
u2af2a Danio rerio ENSDARG00000012505 I 0.758
CpipJ_CPIJ012850 Culex pipiens CpipJ_CPIJ012850 I 0.730
186326 Helobdella robusta 186326 N 0.716