u2af2b (Danio rerio)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSDARG00000011740 T36067_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
U2AF2
M077_0.6 		Homo sapiens UUUUUYC RNAcompete
Ray et al.(2013)
RNCMPT00079 		0.933
U2af50
M078_0.6 		Drosophila melanogaster UUUUUYY RNAcompete
Ray et al.(2013)
RNCMPT00080 		0.769
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000023679 RRM 154 228
ENSDARP00000023679 RRM 264 334
ENSDARP00000023679 RRM 399 460

Links

Other RRM family RBPs
Other Danio rerio RBPs

58 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
u2af2a Danio rerio ENSDARG00000012505 I 0.962
U2AF2 Oryzias latipes ENSORLG00000011545 I 0.957
U2AF2 Tetraodon nigroviridis ENSTNIG00000008106 I 0.957
U2AF2 Gasterosteus aculeatus ENSGACG00000010632 I 0.952
U2AF2 Takifugu rubripes ENSTRUG00000005514 I 0.952
U2AF2 Anolis carolinensis ENSACAG00000015489 I 0.933
LOC690372 Rattus norvegicus ENSRNOG00000015914 I 0.933
LOC100050729 Equus caballus ENSECAG00000010110 I 0.933
U2AF2 Homo sapiens ENSG00000063244 D 0.933
U2AF2 Tursiops truncatus ENSTTRG00000000987 I 0.933
U2AF2 Cavia porcellus ENSCPOG00000001582 I 0.933
ENSLAFG00000018056 Loxodonta africana ENSLAFG00000018056 I 0.933
Ame_R015025 Ailuropoda melanoleuca Ame_R015025 I 0.933
U2af2 Mus musculus ENSMUSG00000030435 I 0.933
ENSMMUG00000004810 Macaca mulatta ENSMMUG00000004810 I 0.933
AAH44032 Xenopus laevis AAH44032 I 0.928
U2AF2 Canis familiaris ENSCAFG00000002551 I 0.928
Q24JZ8_BOVIN Bos taurus ENSBTAG00000002830 I 0.928
u2af2 Xenopus tropicalis ENSXETG00000019128 I 0.928
U2AF2 Pteropus vampyrus ENSPVAG00000004540 I 0.923
ENSTRUG00000006885 Takifugu rubripes ENSTRUG00000006885 I 0.865
ENSGACG00000014500 Gasterosteus aculeatus ENSGACG00000014500 I 0.857
ENSTNIG00000011257 Tetraodon nigroviridis ENSTNIG00000011257 I 0.838
estExt_Genewise1.C_sca_340148 Lottia gigantea estExt_Genewise1.C_sca_340148 I 0.808
XM_001119590.1 Macaca mulatta ENSMMUG00000019197 I 0.798
U2af2 Dipodomys ordii ENSDORG00000003250 I 0.793
nasonia_NCBI_hmm415104 Nasonia vitripennis nasonia_NCBI_hmm415104 I 0.793
LOC100400743 Callithrix jacchus ENSCJAG00000017128 I 0.793
U2AF2 Pan troglodytes ENSPTRG00000011523 I 0.793
amel4_ncbi_hmm5234 Apis mellifera amel4_ncbi_hmm5234 I 0.788
BGIBMGA007082 Bombyx mori BGIBMGA007082 I 0.774
estExt_Genewise1.C_1170024 Capitella teleta estExt_Genewise1.C_1170024 I 0.774
PHUM460480 Pediculus humanus PHUM460480 I 0.774
CPIJ012850 Culex quinquefasciatus CPIJ012850 I 0.774
CpipJ_CPIJ012850 Culex pipiens CpipJ_CPIJ012850 I 0.774
AAEL002818 Aedes aegypti AAEL002818 I 0.774
GM13406 Drosophila sechellia FBgn0168337 I 0.769
GG19328 Drosophila erecta FBgn0111532 I 0.769
GF19596 Drosophila ananassae FBgn0096603 I 0.769
GA22177-RA Drosophila pseudoobscura FBgn0082156 I 0.769
U2af50 Drosophila melanogaster FBgn0005411 D 0.769
GD24494 Drosophila simulans FBgn0195829 I 0.769
GL15893 Drosophila persimilis FBgn0153497 I 0.769
GK10063 Drosophila willistoni FBgn0212078 I 0.769
GE15975 Drosophila yakuba FBgn0233531 I 0.769
AGAP002908 Anopheles gambiae AGAP002908 I 0.764
ENSCSAVG00000006813 Ciona savignyi ENSCSAVG00000006813 I 0.761
GI14308 Drosophila mojavensis FBgn0137061 I 0.760
GH12033 Drosophila grimshawi FBgn0119512 I 0.760
DGIL_AUG5s6719g2t1 Acyrtosiphon pisum DGIL_AUG5s6719g2t1 I 0.760
DGIL_AUG5s4302g1t1 Acyrtosiphon pisum DGIL_AUG5s4302g1t1 I 0.760
185543 Helobdella robusta 185543 I 0.754
ENSCING00000003455 Ciona intestinalis ENSCING00000003455 I 0.752
U2AF2 Felis catus ENSFCAG00000011504 I 0.740
Smp_019690 Schistosoma mansoni Smp_019690 I 0.736
fgenesh1_pm.scaffold_8000042 Nematostella vectensis fgenesh1_pm.scaffold_8000042 I 0.732
DGIL_AUG5s12651g2t1 Acyrtosiphon pisum DGIL_AUG5s12651g2t1 I 0.712
GJ19364 Drosophila virilis FBgn0206507 I 0.707