DGIL_AUG5s6719g2t1 (Acyrtosiphon pisum)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 DGIL_AUG5s6719g2t1 T32089_0.6 DroSpeGe (2008-Jul-18)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
U2af50
M078_0.6 		Drosophila melanogaster UUUUUYY RNAcompete
Ray et al.(2013)
RNCMPT00080 		0.870
U2AF2
M077_0.6 		Homo sapiens UUUUUYC RNAcompete
Ray et al.(2013)
RNCMPT00079 		0.779
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
DGIL_AUG5s6719g2t1 RRM 118 192
DGIL_AUG5s6719g2t1 RRM 242 312
DGIL_AUG5s6719g2t1 RRM 371 432

Links

Other RRM family RBPs
Other Acyrtosiphon pisum RBPs

53 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
DGIL_AUG5s4302g1t1 Acyrtosiphon pisum DGIL_AUG5s4302g1t1 I 0.995
DGIL_AUG5s12651g2t1 Acyrtosiphon pisum DGIL_AUG5s12651g2t1 I 0.933
nasonia_NCBI_hmm415104 Nasonia vitripennis nasonia_NCBI_hmm415104 I 0.913
amel4_ncbi_hmm5234 Apis mellifera amel4_ncbi_hmm5234 I 0.909
CpipJ_CPIJ012850 Culex pipiens CpipJ_CPIJ012850 I 0.899
CPIJ012850 Culex quinquefasciatus CPIJ012850 I 0.899
AAEL002818 Aedes aegypti AAEL002818 I 0.899
AGAP002908 Anopheles gambiae AGAP002908 I 0.894
BGIBMGA007082 Bombyx mori BGIBMGA007082 I 0.885
GI14308 Drosophila mojavensis FBgn0137061 I 0.870
GG19328 Drosophila erecta FBgn0111532 I 0.870
GH12033 Drosophila grimshawi FBgn0119512 I 0.870
GA22177-RA Drosophila pseudoobscura FBgn0082156 I 0.870
GL15893 Drosophila persimilis FBgn0153497 I 0.870
U2af50 Drosophila melanogaster FBgn0005411 D 0.870
GF19596 Drosophila ananassae FBgn0096603 I 0.870
GE15975 Drosophila yakuba FBgn0233531 I 0.870
GK10063 Drosophila willistoni FBgn0212078 I 0.870
GM13406 Drosophila sechellia FBgn0168337 I 0.870
GD24494 Drosophila simulans FBgn0195829 I 0.870
PHUM460480 Pediculus humanus PHUM460480 I 0.865
estExt_Genewise1.C_sca_340148 Lottia gigantea estExt_Genewise1.C_sca_340148 I 0.822
GJ19364 Drosophila virilis FBgn0206507 I 0.812
ENSTRUG00000006885 Takifugu rubripes ENSTRUG00000006885 I 0.798
ENSGACG00000014500 Gasterosteus aculeatus ENSGACG00000014500 I 0.786
U2AF2 Anolis carolinensis ENSACAG00000015489 I 0.784
U2AF2 Homo sapiens ENSG00000063244 D 0.779
ENSLAFG00000018056 Loxodonta africana ENSLAFG00000018056 I 0.779
U2AF2 Cavia porcellus ENSCPOG00000001582 I 0.779
Ame_R015025 Ailuropoda melanoleuca Ame_R015025 I 0.779
Q24JZ8_BOVIN Bos taurus ENSBTAG00000002830 I 0.779
AAH44032 Xenopus laevis AAH44032 I 0.779
ENSMMUG00000004810 Macaca mulatta ENSMMUG00000004810 I 0.779
LOC100050729 Equus caballus ENSECAG00000010110 I 0.779
LOC690372 Rattus norvegicus ENSRNOG00000015914 I 0.779
U2af2 Mus musculus ENSMUSG00000030435 I 0.779
u2af2 Xenopus tropicalis ENSXETG00000019128 I 0.779
U2AF2 Pteropus vampyrus ENSPVAG00000004540 I 0.779
U2AF2 Tursiops truncatus ENSTTRG00000000987 I 0.779
ENSTNIG00000011257 Tetraodon nigroviridis ENSTNIG00000011257 I 0.776
U2AF2 Oryzias latipes ENSORLG00000011545 I 0.774
U2AF2 Canis familiaris ENSCAFG00000002551 I 0.774
u2af2a Danio rerio ENSDARG00000012505 I 0.769
U2AF2 Gasterosteus aculeatus ENSGACG00000010632 I 0.769
U2AF2 Takifugu rubripes ENSTRUG00000005514 I 0.769
U2AF2 Tetraodon nigroviridis ENSTNIG00000008106 I 0.769
estExt_Genewise1.C_1170024 Capitella teleta estExt_Genewise1.C_1170024 I 0.764
u2af2b Danio rerio ENSDARG00000011740 I 0.760
ENSCING00000003455 Ciona intestinalis ENSCING00000003455 I 0.738
185543 Helobdella robusta 185543 I 0.725
ENSCSAVG00000006813 Ciona savignyi ENSCSAVG00000006813 I 0.722
CBG15152 Caenorhabditis briggsae CBG15152 I 0.720
Smp_019690 Schistosoma mansoni Smp_019690 I 0.712