e_gw.526.41.1 (Branchiostoma floridae)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 e_gw.526.41.1 T50216_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
e_gw.526.41.1 RRM 91 113
e_gw.526.41.1 RRM 120 165
e_gw.526.41.1 RRM 208 278
e_gw.526.41.1 RRM 335 396

Links

Other RRM family RBPs
Other Branchiostoma floridae RBPs

13 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa009298m Prunus persica ppa009298m N 0.000
gw1.10.957.1 Selaginella moellendorfii gw1.10.957.1 N 0.000
Glyma15g40060.1 Glycine max Glyma15g40060.1 N 0.000
Glyma08g18810.1 Glycine max Glyma08g18810.1 N 0.000
Glyma06g14050.1 Glycine max Glyma06g14050.1 N 0.000
Glyma06g14030.1 Glycine max Glyma06g14030.1 N 0.000
Glyma04g40760.1 Glycine max Glyma04g40760.1 N 0.000
Glyma04g40750.1 Glycine max Glyma04g40750.1 N 0.000
estExt_Genewise1.C_1960042 Physcomitrella patens estExt_Genewise1.C_1960042 N 0.000
e_gw1.62.48.1 Physcomitrella patens e_gw1.62.48.1 N 0.000
Cucsa.273320 Cucumis sativus Cucsa.273320 N 0.000
Cucsa.071470 Cucumis sativus Cucsa.071470 N 0.000
cassava43127.valid.m1 Manihot esculenta cassava43127.valid.m1 N 0.000
cassava41364.m1 Manihot esculenta cassava41364.m1 N 0.000
cassava41363.m1 Manihot esculenta cassava41363.m1 N 0.000
cassava38065.valid.m1 Manihot esculenta cassava38065.valid.m1 N 0.000
cassava38064.valid.m1 Manihot esculenta cassava38064.valid.m1 N 0.000
gw1.29.636.1 Selaginella moellendorfii gw1.29.636.1 N 0.000
mgf005336m Mimulus guttatus mgf005336m N 0.000
ppa006808m Prunus persica ppa006808m N 0.000
PDK_20s1822231g001 Phoenix dactylifera PDK_20s1822231g001 N 0.000
MDP0000233630 Malus x domestica MDP0000233630 N 0.000
MDP0000155814 Malus x domestica MDP0000155814 N 0.000
chr3.CM0059.50.nd Lotus japonicus chr3.CM0059.50.nd N 0.000
Medtr3g122920 Medicago truncatula Medtr3g122920 N 0.000
Medtr3g122880 Medicago truncatula Medtr3g122880 N 0.000
GRMZM2G173428 Zea mays GRMZM2G173428 N 0.000
GRMZM2G118590 Zea mays GRMZM2G118590 N 0.000
GRMZM2G069816 Zea mays GRMZM2G069816 N 0.000
GRMZM2G069102 Zea mays GRMZM2G069102 N 0.000
GRMZM2G051043 Zea mays GRMZM2G051043 N 0.000
GRMZM2G029058 Zea mays GRMZM2G029058 N 0.000
mgf014445m Mimulus guttatus mgf014445m N 0.000
mgf013366m Mimulus guttatus mgf013366m N 0.000
mgf012896m Mimulus guttatus mgf012896m N 0.000
cassava38063.valid.m1 Manihot esculenta cassava38063.valid.m1 N 0.000
cassava37979.valid.m1 Manihot esculenta cassava37979.valid.m1 N 0.000
XM_002893696.1 Arabidopsis lyrata fgenesh2_kg.1__3419__AT1G32790.2 N 0.000
BRADI3G13740 Brachypodium distachyon BRADI3G13740 N 0.000
BRADI3G09250 Brachypodium distachyon BRADI3G09250 N 0.000
BRADI2G06650 Brachypodium distachyon BRADI2G06650 N 0.000
BRADI1G39150 Brachypodium distachyon BRADI1G39150 N 0.000
BGIOSIBCE026288 Oryza indica BGIOSIBCE026288 N 0.000
BGIOSIBCE022210 Oryza indica BGIOSIBCE022210 N 0.000
BGIOSIBCE006292 Oryza indica BGIOSIBCE006292 N 0.000
ATRBP37 Arabidopsis thaliana AT4G10610-TAIR-G N 0.000
CID10 Arabidopsis thaliana AT3G49390-TAIR-G N 0.000
CID9 Arabidopsis thaliana AT3G14450-TAIR-G N 0.000
CID8 Arabidopsis thaliana AT1G53650-TAIR-G N 0.000
CID11 Arabidopsis thaliana AT1G32790-TAIR-G N 0.000
XM_002894411.1 Arabidopsis lyrata Al_scaffold_0001_4812 N 0.000
PK28889.1 Cannabis sativa PK28889.1 N 0.000
PK12463.1 Cannabis sativa PK12463.1 N 0.000
XM_002882834.1 Arabidopsis lyrata fgenesh2_kg.3__1570__AT3G14450.1 N 0.000
XM_002877626.1 Arabidopsis lyrata fgenesh2_kg.5__1290__AT3G49390.2 N 0.000
cassava37978.valid.m1 Manihot esculenta cassava37978.valid.m1 N 0.000
cassava23841.valid.m1 Manihot esculenta cassava23841.valid.m1 N 0.000
30068.m002593 Ricinus communis 30068.m002593 N 0.000
29485.m000140 Ricinus communis 29485.m000140 N 0.000
SB10G021290 Sorghum bicolor Sb10g021290 N 0.000
SB07G001560 Sorghum bicolor Sb07g001560 N 0.000
Sb04g008740 Sorghum bicolor Sb04g008740 N 0.000
SB03G002180 Sorghum bicolor Sb03g002180 N 0.000
LOC_Os08g02330 Oryza sativa LOC_Os08g02330 N 0.000
LOC_Os06g35030 Oryza sativa LOC_Os06g35030 N 0.000
LOC_Os02g14760 Oryza sativa LOC_Os02g14760 N 0.000
LOC_Os01g11120 Oryza sativa LOC_Os01g11120 N 0.000
GSVIVG00038633001 Vitis vinifera GSVIVG00038633001 N 0.000
GSVIVG00019674001 Vitis vinifera GSVIVG00019674001 N 0.000
GSVIVG00001961001 Vitis vinifera GSVIVG00001961001 N 0.000
XM_002872481.1 Arabidopsis lyrata fgenesh2_kg.6__3042__AT4G10610.1 N 0.000
PK04894.1 Cannabis sativa PK04894.1 N 0.000