CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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WUBG_04401
(
Wuchereria bancrofti
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
WUBG_04401
T31518_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
WUBG_04401T0
RRM
167
192
LYVGNIPFGCSEDAMLDFFNQQMHLC
WUBG_04401T0
RRM
196
241
QAPGNPVLACQMNLDKNFAFIEFRSIDETTAGMAFDGINFMGQQLK
WUBG_04401T0
RRM
273
343
IFIGGLPSYLNAEQVKELLSSFGQLKAFNLVTEQSTGVSKGYAFAEYLDPSLTDQAIAGLNGMQLGDKNLV
WUBG_04401T0
RRM
402
463
LEDIREECAKYGIVKSLEIPRSVPGVDVTGVGKVFVEFNSKQECQKAQAALTGRKFANRTVV
Links
Other
RRM
family RBPs
Other
Wuchereria bancrofti
RBPs
8 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Bm1_09760
Brugia malayi
Bm1_09760
N
1.000
Ppa-uaf-1
Pristionchus pacificus
PPA25373
N
0.844
uaf-1
Caenorhabditis elegans
Y92C3B.2
N
0.820
CBN25972
Caenorhabditis brenneri
CBN25972
N
0.812
CRE16190
Caenorhabditis remanei
CRE16190
N
0.808
Minc05098
Meloidogyne incognita
Minc05098
N
0.800
e_gw.526.41.1
Branchiostoma floridae
e_gw.526.41.1
N
0.756
estExt_fgenesh2_pm.C_220017
Branchiostoma floridae
estExt_fgenesh2_pm.C_220017
N
0.752