CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
CRE16190
(
Caenorhabditis remanei
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CRE16190
T34421_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CRE16190
RRM
186
211
LYVGNIPFGCNEEAMLDFFNQQMHLC
CRE16190
RRM
216
260
APGNPILLCQINLDKNFAFIEFRSIDETTAGMAFDGINFMGQQLK
CRE16190
RRM
293
362
IFIGGLPNYLTEDQVKELLCSFGPLKAFSLNMDSQGNSKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLV
CRE16190
RRM
418
482
EEILEDVREECSKYGIVRSLEIPRPYDEQPVPGVGKVFVEFATTSDCQRAQAALTGRKFANRTVV
Links
Other
RRM
family RBPs
Other
Caenorhabditis remanei
RBPs
9 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CBN25972
Caenorhabditis brenneri
CBN25972
N
0.985
uaf-1
Caenorhabditis elegans
Y92C3B.2
N
0.956
Ppa-uaf-1
Pristionchus pacificus
PPA25373
N
0.831
WUBG_04401
Wuchereria bancrofti
WUBG_04401
N
0.808
Bm1_09760
Brugia malayi
Bm1_09760
N
0.808
Minc05098
Meloidogyne incognita
Minc05098
N
0.760
e_gw.526.41.1
Branchiostoma floridae
e_gw.526.41.1
N
0.721
estExt_fgenesh2_pm.C_220017
Branchiostoma floridae
estExt_fgenesh2_pm.C_220017
N
0.718
ENSLAFG00000028496
Loxodonta africana
ENSLAFG00000028496
N
0.700