estExt_fgenesh2_pm.C_3790010 (Branchiostoma floridae)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_fgenesh2_pm.C_3790010 T50941_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh2_pm.C_3790010 RRM 216 289

Links

Other RRM family RBPs
Other Branchiostoma floridae RBPs

48 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Smp_161730 Schistosoma mansoni Smp_161730 N 0.703
U2SURP Tupaia belangeri ENSTBEG00000016313 N 0.773
U2SURP Spermophilus tridecemlineatus ENSSTOG00000015997 N 0.707
U2SURP Sus scrofa ENSSSCG00000011684 N 0.773
RGD1307882 Rattus norvegicus ENSRNOG00000008607 N 0.773
U2SURP Pteropus vampyrus ENSPVAG00000016077 N 0.773
U2SURP Pan troglodytes ENSPTRG00000015489 N 0.773
ENSPPYG00000014178 Pongo pygmaeus ENSPPYG00000014178 N 0.773
U2SURP Procavia capensis ENSPCAG00000015251 N 0.773
U2SURP Oryzias latipes ENSORLG00000010235 N 0.747
U2SURP Oryctolagus cuniculus ENSOCUG00000012121 N 0.773
U2SURP Taeniopygia guttata ENSTGUG00000008687 N 0.773
U2SURP Tetraodon nigroviridis ENSTNIG00000012767 N 0.747
Ame_R004744 Ailuropoda melanoleuca Ame_R004744 N 0.773
Sjc_0023880 Schistosoma japonicum Sjc_0023880 N 0.703
estExt_Genewise1.C_650028 Daphnia pulex estExt_Genewise1.C_650028 N 0.716
Aqu1.228676 Amphimedon queenslandica Aqu1.228676 N 0.757
Aqu1.228675 Amphimedon queenslandica Aqu1.228675 N 0.757
Aqu1.202889 Amphimedon queenslandica Aqu1.202889 N 0.757
sr140 Xenopus tropicalis ENSXETG00000022133 N 0.747
U2SURP Vicugna pacos ENSVPAG00000004697 N 0.773
U2SURP Tursiops truncatus ENSTTRG00000017170 N 0.773
U2SURP Takifugu rubripes ENSTRUG00000017810 N 0.747
U2SURP Ornithorhynchus anatinus ENSOANG00000003644 N 0.773
2610101N10Rik Mus musculus ENSMUSG00000032407 N 0.773
U2SURP Erinaceus europaeus ENSEEUG00000013553 N 0.773
LOC100051188 Equus caballus ENSECAG00000022460 N 0.773
U2SURP Dasypus novemcinctus ENSDNOG00000006427 N 0.773
zgc:163098 Danio rerio ENSDARG00000078911 N 0.757
U2SURP Danio rerio ENSDARG00000061490 N 0.733
U2SURP Cavia porcellus ENSCPOG00000011656 N 0.773
LOC100411013 Callithrix jacchus ENSCJAG00000001639 N 0.773
U2SURP Choloepus hoffmanni ENSCHOG00000001300 N 0.773
U2SURP Canis familiaris ENSCAFG00000007973 N 0.773
Q148C6_BOVIN Bos taurus ENSBTAG00000009154 N 0.773
U2SURP Echinops telfairi ENSETEG00000000149 N 0.773
U2SURP Homo sapiens ENSG00000163714 N 0.773
XM_001372164.1 Monodelphis domestica ENSMODG00000021242 N 0.773
ENSMODG00000010847 Monodelphis domestica ENSMODG00000010847 N 0.743
U2SURP Macaca mulatta ENSMMUG00000002775 N 0.773
U2SURP Myotis lucifugus ENSMLUG00000002920 N 0.773
U2SURP Meleagris gallopavo ENSMGAG00000006549 N 0.773
U2SURP Macropus eugenii ENSMEUG00000000127 N 0.773
U2SURP Loxodonta africana ENSLAFG00000002566 N 0.773
U2SURP Gorilla gorilla ENSGGOG00000005563 N 0.773
LOC424773 Gallus gallus ENSGALG00000002612 N 0.773
U2SURP Gasterosteus aculeatus ENSGACG00000003763 N 0.747
U2SURP Anolis carolinensis ENSACAG00000009512 N 0.773