CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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fgenesh1_pg.4_#_772
(
Myceliophthora thermophila
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
fgenesh1_pg.4_#_772
T51745_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh1_pg.4_#_772
RRM
202
254
VYLGNIPPDTSAEEILGHVRSGQIESVRLLPDKNCAFISFLDASSATHFHSDA
fgenesh1_pg.4_#_772
RRM
293
350
VYLGNLPEDITEEELREDLGKFGPIDTVKIVREKNIAFVHFLSIANAIKAVTQLPQEP
fgenesh1_pg.4_#_772
RRM
427
492
IYLGNIHPETTIEEICNVVRGGLLHHIRYIPDKHICFVTFIDPTAAASFYALSNLQGLMIHNRRLK
fgenesh1_pg.4_#_772
RRM
518
581
VYIGNLDETWTEERLRQDFSEYGEIELVNTLREKSCAFVNFTNIANAIKAIEAVRSKEEYKKFK
Links
Other
RRM
family RBPs
Other
Myceliophthora thermophila
RBPs
49 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
amel4_ncbi_hmm2546
Apis mellifera
amel4_ncbi_hmm2546
N
0.000
LARP6
Meleagris gallopavo
ENSMGAG00000005077
N
0.000
LARP6
Monodelphis domestica
ENSMODG00000009034
N
0.000
Larp6
Mus musculus
ENSMUSG00000034839
N
0.000
LARP6
Oryctolagus cuniculus
ENSOCUG00000009306
N
0.000
ENSOPRG00000004868
Ochotona princeps
ENSOPRG00000004868
N
0.000
LARP6
Oryzias latipes
ENSORLG00000014256
N
0.000
Larp6
Rattus norvegicus
ENSRNOG00000012438
N
0.000
LARP6
Taeniopygia guttata
ENSTGUG00000005808
N
0.000
LARP6
Tetraodon nigroviridis
ENSTNIG00000011926
N
0.000
LARP6
Takifugu rubripes
ENSTRUG00000003151
N
0.000
SNAPOd2T00012503001
Oikopleura dioica
SNAPOd2T00012503001
N
0.000
BGIBMGA013975
Bombyx mori
BGIBMGA013975
N
0.000
LARP6
Macropus eugenii
ENSMEUG00000002270
N
0.000
LARP6
Loxodonta africana
ENSLAFG00000016343
N
0.000
DGIL_AUG5s14155g1t1
Acyrtosiphon pisum
DGIL_AUG5s14155g1t1
N
0.000
LARP6
Anolis carolinensis
ENSACAG00000008613
N
0.000
LARP6
Choloepus hoffmanni
ENSCHOG00000003318
N
0.000
LARP6
Cavia porcellus
ENSCPOG00000022687
N
0.000
ENSCSAVG00000011718
Ciona savignyi
ENSCSAVG00000011718
N
0.000
larp6
Danio rerio
ENSDARG00000005355
N
0.000
Larp6
Dipodomys ordii
ENSDORG00000012663
N
0.000
LARP6
Echinops telfairi
ENSETEG00000020390
N
0.000
LARP6
Felis catus
ENSFCAG00000001361
N
0.000
LARP6
Gasterosteus aculeatus
ENSGACG00000014622
N
0.000
LARP6
Gallus gallus
ENSGALG00000004046
N
0.000
LOC420093
Gallus gallus
ENSGALG00000024381
N
0.000
Ame_R010574
Ailuropoda melanoleuca
Ame_R010574
N
0.000