ppa001327m (Prunus persica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ppa001327m T58322_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ppa001327m RRM 200 265
ppa001327m RRM 285 350
ppa001327m RRM 696 767

Links

Other RRM family RBPs
Other Prunus persica RBPs

71 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa001307m Prunus persica ppa001307m N 0.941
Glyma08g01040.1 Glycine max Glyma08g01040.1 N 0.784
estExt_gwp_gw1.C_780034 Physcomitrella patens estExt_gwp_gw1.C_780034 N 0.922
estExt_fgenesh2_pg.C_120305 Selaginella moellendorfii estExt_fgenesh2_pg.C_120305 N 0.892
e_gw1.78.82.1 Physcomitrella patens e_gw1.78.82.1 N 0.922
e_gw1.271.39.1 Physcomitrella patens e_gw1.271.39.1 N 0.926
e_gw1.12.24.1 Selaginella moellendorfii e_gw1.12.24.1 N 0.892
Cucsa.349210 Cucumis sativus Cucsa.349210 N 0.877
Cucsa.185450 Cucumis sativus Cucsa.185450 N 0.956
Cucsa.047430 Cucumis sativus Cucsa.047430 N 0.912
cassava6429.valid.m1 Manihot esculenta cassava6429.valid.m1 N 0.956
cassava44897.m1 Manihot esculenta cassava44897.m1 N 0.961
cassava42355.valid.m1 Manihot esculenta cassava42355.valid.m1 N 0.961
cassava42354.valid.m1 Manihot esculenta cassava42354.valid.m1 N 0.961
cassava42353.valid.m1 Manihot esculenta cassava42353.valid.m1 N 0.961
cassava42352.valid.m1 Manihot esculenta cassava42352.valid.m1 N 0.961
Glyma08g42230.1 Glycine max Glyma08g42230.1 N 0.975
Glyma09g11630.1 Glycine max Glyma09g11630.1 N 0.926
Glyma15g23420.1 Glycine max Glyma15g23420.1 N 0.946
ppa000997m Prunus persica ppa000997m N 0.824
ppa000845m Prunus persica ppa000845m N 0.863
chr6.CM0037.1500.nc Lotus japonicus chr6.CM0037.1500.nc N 0.926
Medtr3g151260 Medicago truncatula Medtr3g151260 N 0.740
Medtr2g056620 Medicago truncatula Medtr2g056620 N 0.936
GRMZM2G451716 Zea mays GRMZM2G451716 N 0.721
GRMZM2G154229 Zea mays GRMZM2G154229 N 0.892
GRMZM2G012302 Zea mays GRMZM2G012302 N 0.805
GRMZM2G004455 Zea mays GRMZM2G004455 N 0.897
mgf023970m Mimulus guttatus mgf023970m N 0.858
mgf015667m Mimulus guttatus mgf015667m N 0.858
mgf014747m Mimulus guttatus mgf014747m N 0.937
mgf005765m Mimulus guttatus mgf005765m N 0.937
mgf000415m Mimulus guttatus mgf000415m N 0.858
Glyma18g12730.1 Glycine max Glyma18g12730.1 N 0.980
cassava37262.valid.m1 Manihot esculenta cassava37262.valid.m1 N 0.755
cassava37261.valid.m1 Manihot esculenta cassava37261.valid.m1 N 0.755
cassava13648.valid.m1 Manihot esculenta cassava13648.valid.m1 N 0.794
GSVIVG00001086001 Vitis vinifera GSVIVG00001086001 N 0.892
XM_002870025.1 Arabidopsis lyrata fgenesh2_kg.7__2489__AT4G18120.1 N 0.779
BRADI5G08580 Brachypodium distachyon BRADI5G08580 N 0.740
BRADI3G44380 Brachypodium distachyon BRADI3G44380 N 0.843
BRADI3G10967 Brachypodium distachyon BRADI3G10967 N 0.804
BRADI1G52280 Brachypodium distachyon BRADI1G52280 N 0.887
BGIOSIBCE008451 Oryza indica BGIOSIBCE008451 N 0.868
BGIOSIBCE007174 Oryza indica BGIOSIBCE007174 N 0.824
BGIOSIBCE006715 Oryza indica BGIOSIBCE006715 N 0.799
ML2 Arabidopsis thaliana AT2G42890-TAIR-G N 0.740
ML5 Arabidopsis thaliana AT1G29400-TAIR-G N 0.873
XM_002893514.1 Arabidopsis lyrata Al_scaffold_0001_2998 N 0.868
PK25465.1 Cannabis sativa PK25465.1 N 0.961
PK24656.1 Cannabis sativa PK24656.1 N 0.926
PK19379.1 Cannabis sativa PK19379.1 N 0.784
GSVIVG00008646001 Vitis vinifera GSVIVG00008646001 N 0.917
GSVIVG00021379001 Vitis vinifera GSVIVG00021379001 N 0.961
LOC_Os02g21430 Oryza sativa LOC_Os02g21430 N 0.799
cassava13647.valid.m1 Manihot esculenta cassava13647.valid.m1 N 0.794
cassava12910.valid.m1 Manihot esculenta cassava12910.valid.m1 N 0.843
30147.m014409 Ricinus communis 30147.m014409 N 0.858
29693.m002077 Ricinus communis 29693.m002077 N 0.926
28350.m000106 Ricinus communis 28350.m000106 N 0.951
SB10G000350 Sorghum bicolor Sb10g000350 N 0.897
SB06G014670 Sorghum bicolor Sb06g014670 N 0.701
SB04G021130 Sorghum bicolor Sb04g021130 N 0.824
B9I403_POPTR Populus trichocarpa POPTR_0012s10900 N 0.814
B9H813_POPTR Populus trichocarpa POPTR_0005s22370 N 0.956
B9GZ23_POPTR Populus trichocarpa POPTR_0003s16110 N 0.828
B9GT36_POPTR Populus trichocarpa POPTR_0002s06070 N 0.956
B9GMT5_POPTR Populus trichocarpa POPTR_0001s13030 N 0.844
LOC_Os02g48790 Oryza sativa LOC_Os02g48790 N 0.868
LOC_Os02g31290 Oryza sativa LOC_Os02g31290 N 0.824
PK15886.1 Cannabis sativa PK15886.1 N 0.863