AAH84321 (Xenopus laevis)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 AAH84321 T62587_0.6 Xenbase (2010-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YTHDC1
M354_0.6 		Homo sapiens KVVURC SELEX
Cook et al.(2011)
969_20167602 		0.907
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
AAH84321 YTH 378 474

Links

Other YTH family RBPs
Other Xenopus laevis RBPs

42 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
YTHDC1 Homo sapiens ENSG00000083896 D 0.907
amel4_ncbi_hmm4222 Apis mellifera amel4_ncbi_hmm4222 I 0.000
YTHDC1 Oryctolagus cuniculus ENSOCUG00000015886 I 0.918
YTHDC1 Otolemur garnettii ENSOGAG00000003362 I 0.918
YTHDC1 Ochotona princeps ENSOPRG00000008986 I 0.897
ENSPPYG00000014726 Pongo pygmaeus ENSPPYG00000014726 I 0.907
YTHDC1 Pan troglodytes ENSPTRG00000016105 I 0.907
YTHDC1 Pteropus vampyrus ENSPVAG00000015551 I 0.907
Ythdc1 Rattus norvegicus ENSRNOG00000001996 I 0.907
YTHDC1 Sorex araneus ENSSARG00000010960 I 0.907
YTHDC1 Tupaia belangeri ENSTBEG00000011546 I 0.907
YTHDC1 Taeniopygia guttata ENSTGUG00000004452 I 0.928
YTHDC1 Tursiops truncatus ENSTTRG00000005083 I 0.907
YTHDC1 Vicugna pacos ENSVPAG00000009040 I 0.907
ythdc1 Xenopus tropicalis ENSXETG00000017960 I 0.979
PHUM305930 Pediculus humanus PHUM305930 I 0.000
Ame_R018249 Ailuropoda melanoleuca Ame_R018249 I 0.918
YTHDC1 Ornithorhynchus anatinus ENSOANG00000014398 I 0.918
Ythdc1 Mus musculus ENSMUSG00000035851 I 0.907
nasonia_NCBI_hmm460384 Nasonia vitripennis nasonia_NCBI_hmm460384 I 0.000
YTHDC1 Anolis carolinensis ENSACAG00000009697 I 0.897
Q29RQ7_BOVIN Bos taurus ENSBTAG00000015572 I 0.907
YTHDC1 Canis familiaris ENSCAFG00000002821 I 0.918
YTHDC1 Callithrix jacchus ENSCJAG00000009934 I 0.907
YTHDC1 Cavia porcellus ENSCPOG00000010929 I 0.907
ythdc1 Danio rerio ENSDARG00000051953 I 0.897
Ythdc1 Dipodomys ordii ENSDORG00000013045 I 0.907
LOC100066303 Equus caballus ENSECAG00000018303 I 0.918
YTHDC1 Erinaceus europaeus ENSEEUG00000015466 I 0.907
Q5F341_CHICK Gallus gallus ENSGALG00000011795 I 0.928
YTHDC1 Gorilla gorilla ENSGGOG00000021958 I 0.907
YTHDC1 Loxodonta africana ENSLAFG00000021592 I 0.918
YTHDC1 Meleagris gallopavo ENSMGAG00000010391 I 0.928
YTHDC1 Macaca mulatta ENSMMUG00000002265 I 0.907
XP_001181366.1 Strongylocentrotus purpuratus XP_001181366.1 I 0.000