XP_001181366.1 (Strongylocentrotus purpuratus)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 XP_001181366.1 T62572_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YTHDC1
M354_0.6 		Homo sapiens KVVURC SELEX
Cook et al.(2011)
969_20167602 		0.701
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
XP_001181366.1 YTH 414 510

Links

Other YTH family RBPs
Other Strongylocentrotus purpuratus RBPs

35 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XP_783255.2 Strongylocentrotus purpuratus XP_783255.2 I 1.000
amel4_ncbi_hmm4222 Apis mellifera amel4_ncbi_hmm4222 I 0.742
nasonia_NCBI_hmm460384 Nasonia vitripennis nasonia_NCBI_hmm460384 I 0.732
PHUM305930 Pediculus humanus PHUM305930 I 0.722
ythdc1 Danio rerio ENSDARG00000051953 I 0.722
YTHDC1 Oryctolagus cuniculus ENSOCUG00000015886 I 0.711
Q5F341_CHICK Gallus gallus ENSGALG00000011795 I 0.711
YTHDC1 Loxodonta africana ENSLAFG00000021592 I 0.711
YTHDC1 Meleagris gallopavo ENSMGAG00000010391 I 0.711
YTHDC1 Anolis carolinensis ENSACAG00000009697 I 0.711
YTHDC1 Taeniopygia guttata ENSTGUG00000004452 I 0.711
YTHDC1 Otolemur garnettii ENSOGAG00000003362 I 0.711
YTHDC1 Ornithorhynchus anatinus ENSOANG00000014398 I 0.711
YTHDC1 Canis familiaris ENSCAFG00000002821 I 0.711
LOC100066303 Equus caballus ENSECAG00000018303 I 0.711
Ame_R018249 Ailuropoda melanoleuca Ame_R018249 I 0.711
Ythdc1 Rattus norvegicus ENSRNOG00000001996 I 0.701
YTHDC1 Pteropus vampyrus ENSPVAG00000015551 I 0.701
YTHDC1 Tursiops truncatus ENSTTRG00000005083 I 0.701
ythdc1 Xenopus tropicalis ENSXETG00000017960 I 0.701
YTHDC1 Vicugna pacos ENSVPAG00000009040 I 0.701
YTHDC1 Pan troglodytes ENSPTRG00000016105 I 0.701
YTHDC1 Tupaia belangeri ENSTBEG00000011546 I 0.701
YTHDC1 Sorex araneus ENSSARG00000010960 I 0.701
YTHDC1 Macaca mulatta ENSMMUG00000002265 I 0.701
Ythdc1 Dipodomys ordii ENSDORG00000013045 I 0.701
YTHDC1 Cavia porcellus ENSCPOG00000010929 I 0.701
YTHDC1 Callithrix jacchus ENSCJAG00000009934 I 0.701
Q29RQ7_BOVIN Bos taurus ENSBTAG00000015572 I 0.701
YTHDC1 Erinaceus europaeus ENSEEUG00000015466 I 0.701
YTHDC1 Homo sapiens ENSG00000083896 D 0.701
YTHDC1 Ochotona princeps ENSOPRG00000008986 I 0.701
Ythdc1 Mus musculus ENSMUSG00000035851 I 0.701
YTHDC1 Gorilla gorilla ENSGGOG00000021958 I 0.701
ENSPPYG00000014726 Pongo pygmaeus ENSPPYG00000014726 I 0.701