ythdc1 (Xenopus tropicalis)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 ENSXETG00000017960 T62173_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YTHDC1
M354_0.6 		Homo sapiens KVVURC SELEX
Cook et al.(2011)
969_20167602 		0.928
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSXETP00000038938 YTH 379 475
ENSXETP00000054717 YTH 349 445

Links

Other YTH family RBPs
Other Xenopus tropicalis RBPs

46 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAH84321 Xenopus laevis AAH84321 I 0.979
YTHDC1 Meleagris gallopavo ENSMGAG00000010391 I 0.948
Q5F341_CHICK Gallus gallus ENSGALG00000011795 I 0.948
YTHDC1 Taeniopygia guttata ENSTGUG00000004452 I 0.948
YTHDC1 Ornithorhynchus anatinus ENSOANG00000014398 I 0.938
YTHDC1 Oryctolagus cuniculus ENSOCUG00000015886 I 0.938
LOC100066303 Equus caballus ENSECAG00000018303 I 0.938
YTHDC1 Otolemur garnettii ENSOGAG00000003362 I 0.938
YTHDC1 Loxodonta africana ENSLAFG00000021592 I 0.938
YTHDC1 Canis familiaris ENSCAFG00000002821 I 0.938
Ame_R018249 Ailuropoda melanoleuca Ame_R018249 I 0.938
Ythdc1 Mus musculus ENSMUSG00000035851 I 0.928
YTHDC1 Cavia porcellus ENSCPOG00000010929 I 0.928
YTHDC1 Tursiops truncatus ENSTTRG00000005083 I 0.928
YTHDC1 Tupaia belangeri ENSTBEG00000011546 I 0.928
YTHDC1 Vicugna pacos ENSVPAG00000009040 I 0.928
Ythdc1 Rattus norvegicus ENSRNOG00000001996 I 0.928
YTHDC1 Pteropus vampyrus ENSPVAG00000015551 I 0.928
YTHDC1 Pan troglodytes ENSPTRG00000016105 I 0.928
ENSPPYG00000014726 Pongo pygmaeus ENSPPYG00000014726 I 0.928
YTHDC1 Sorex araneus ENSSARG00000010960 I 0.928
YTHDC1 Macaca mulatta ENSMMUG00000002265 I 0.928
YTHDC1 Callithrix jacchus ENSCJAG00000009934 I 0.928
Ythdc1 Dipodomys ordii ENSDORG00000013045 I 0.928
YTHDC1 Homo sapiens ENSG00000083896 D 0.928
YTHDC1 Gorilla gorilla ENSGGOG00000021958 I 0.928
Q29RQ7_BOVIN Bos taurus ENSBTAG00000015572 I 0.928
YTHDC1 Erinaceus europaeus ENSEEUG00000015466 I 0.928
YTHDC1 Anolis carolinensis ENSACAG00000009697 I 0.918
ythdc1 Danio rerio ENSDARG00000051953 I 0.918
YTHDC1 Ochotona princeps ENSOPRG00000008986 I 0.918
YTHDC1 Takifugu rubripes ENSTRUG00000010142 I 0.907
YTHDC1 Tetraodon nigroviridis ENSTNIG00000013243 I 0.897
YTHDC1 Tarsius syrichta ENSTSYG00000011668 I 0.887
YTHDC1 Gasterosteus aculeatus ENSGACG00000015486 I 0.887
ENSMODG00000020754 Monodelphis domestica ENSMODG00000020754 I 0.845
ENSMODG00000014337 Monodelphis domestica ENSMODG00000014337 I 0.814
ENSMODG00000004117 Monodelphis domestica ENSMODG00000004117 I 0.784
ENSMODG00000010076 Monodelphis domestica ENSMODG00000010076 I 0.784
ENSMODG00000009173 Monodelphis domestica ENSMODG00000009173 I 0.773
YTHDC1 Dasypus novemcinctus ENSDNOG00000004949 I 0.773
YTHDC1 Myotis lucifugus ENSMLUG00000016300 I 0.753
XP_001181366.1 Strongylocentrotus purpuratus XP_001181366.1 I 0.701
XP_783255.2 Strongylocentrotus purpuratus XP_783255.2 I 0.701
amel4_ncbi_hmm4222 Apis mellifera amel4_ncbi_hmm4222 I 0.701