CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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LOC100056195
(
Equus caballus
)
CCCH ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1)
IPR000571
IPR000504
ENSECAG00000006454
T00493_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSECAP00000004944
CCCH ZF
170
196
KDRANCPFYSKTGACRFGDRCSRKHNF
ENSECAP00000004944
RRM
243
301
YDDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQTALSLFNGRWYAGRQLQ
ENSECAP00000004944
CCCH ZF
310
335
WKMAICGLFEIQQCPRGKHCNFLHVF
Links
Other
CCCH ZF,RRM
family RBPs
Other
Equus caballus
RBPs
39 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAEL003401
Aedes aegypti
AAEL003401
N
0.000
amel4_ncbi_hmm13760
Apis mellifera
amel4_ncbi_hmm13760
N
0.000
amel4_ncbi_hmm13760
Tribolium castaneum
amel4_ncbi_hmm13760
N
0.000
CPIJ001219
Culex quinquefasciatus
CPIJ001219
N
0.000
CpipJ_CPIJ001219
Culex pipiens
CpipJ_CPIJ001219
N
0.000
ENSCSAVG00000002667
Ciona savignyi
ENSCSAVG00000002667
N
0.000
estExt_Genewise1Plus.C_sca_120103
Lottia gigantea
estExt_Genewise1Plus.C_sca_120103
N
0.000
nasonia_NCBI_hmm304924
Nasonia vitripennis
nasonia_NCBI_hmm304924
N
0.000
PHUM079870
Pediculus humanus
PHUM079870
N
0.000
XP_001175504.1
Strongylocentrotus purpuratus
XP_001175504.1
N
0.000
XP_001175728.1
Strongylocentrotus purpuratus
XP_001175728.1
N
0.000
XP_001176876.1
Strongylocentrotus purpuratus
XP_001176876.1
N
0.000
XP_780458.1
Strongylocentrotus purpuratus
XP_780458.1
N
0.000