gw1.233.15.1 (Physcomitrella patens)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 gw1.233.15.1 T05525_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
gw1.233.15.1 CCCH ZF 90 115

Links

Other CCCH ZF family RBPs
Other Physcomitrella patens RBPs

98 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29805.m001499 Ricinus communis 29805.m001499 N 0.846
72073 Helobdella robusta 72073 N 0.769
AAH77826 Xenopus laevis AAH77826 N 0.808
amel4_ncbi_hmm11607 Apis mellifera amel4_ncbi_hmm11607 N 0.808
Ame_R017931 Ailuropoda melanoleuca Ame_R017931 N 0.808
AT2G20280 Arabidopsis thaliana AT2G20280-TAIR-G N 0.808
B9HM02_POPTR Populus trichocarpa POPTR_0008s04540 N 0.846
B9MT73_POPTR Populus trichocarpa POPTR_0308s00200 N 0.846
BAD89267 Xenopus laevis BAD89267 N 0.808
BGIBMGA011604 Bombyx mori BGIBMGA011604 N 0.808
BGIOSIBCE004176 Oryza indica BGIOSIBCE004176 N 0.846
Bm1_13920 Brugia malayi Bm1_13920 N 0.731
BRADI2G54220 Brachypodium distachyon BRADI2G54220 N 0.808
cassava28857.valid.m1 Manihot esculenta cassava28857.valid.m1 N 0.808
cassava28858.valid.m1 Manihot esculenta cassava28858.valid.m1 N 0.808
cassava3130.m1 Manihot esculenta cassava3130.m1 N 0.808
chr5.LjT08O17.30.nd Lotus japonicus chr5.LjT08O17.30.nd N 0.846
CPAG_03559 Candida parapsilosis CPAG_03559 N 0.731
DEHA0A09449g Debaryomyces hansenii DEHA0A09449g N 0.846
DGIL_AUG5s16g7t1 Acyrtosiphon pisum DGIL_AUG5s16g7t1 N 0.808
EFA82915.1 Polysphondylium pallidum EFA82915.1 N 0.769
ENSCPOG00000012965 Cavia porcellus ENSCPOG00000012965 N 0.808
ENSETEG00000015556 Echinops telfairi ENSETEG00000015556 N 0.769
ENSLAFG00000001563 Loxodonta africana ENSLAFG00000001563 N 0.808
ENSOCUG00000011903 Oryctolagus cuniculus ENSOCUG00000011903 N 0.808
ENSOCUG00000011909 Oryctolagus cuniculus ENSOCUG00000011909 N 0.769
ENSOPRG00000015790 Ochotona princeps ENSOPRG00000015790 N 0.808
ENSPPYG00000013004 Pongo pygmaeus ENSPPYG00000013004 N 0.808
estExt_fgenesh1_pm.C_130118 Neurospora tetrasperma estExt_fgenesh1_pm.C_130118 N 0.731
estExt_Genewise1.C_110154 Neurospora discreta estExt_Genewise1.C_110154 N 0.731
estExt_Genewise1Plus.C_sca_2280007 Lottia gigantea estExt_Genewise1Plus.C_sca_2280007 N 0.808
estExt_gwp.C_6160004 Branchiostoma floridae estExt_gwp.C_6160004 N 0.769
e_gw.53.202.1 Nematostella vectensis e_gw.53.202.1 N 0.731
e_gw1.3.744.1 Selaginella moellendorfii e_gw1.3.744.1 N 0.923
GD10149 Drosophila simulans FBgn0181924 N 0.769
GK21573 Drosophila willistoni FBgn0223565 N 0.769
Glyma03g33420.1 Glycine max Glyma03g33420.1 N 0.808
Glyma10g05550.1 Glycine max Glyma10g05550.1 N 0.846
Glyma13g19900.1 Glycine max Glyma13g19900.1 N 0.808
Glyma19g36150.1 Glycine max Glyma19g36150.1 N 0.808
GRMZM2G032258 Zea mays GRMZM2G032258 N 0.808
GSVIVG00016357001 Vitis vinifera GSVIVG00016357001 N 0.808
ITGAV Monodelphis domestica ENSMODG00000010653 N 0.808
LOAG_00784 Loa loa LOAG_00784 N 0.731
LOC100068634 Equus caballus ENSECAG00000017149 N 0.808
LOC_Os01g61830 Oryza sativa LOC_Os01g61830 N 0.846
MDP0000161236 Malus x domestica MDP0000161236 N 0.808
Minc08580 Meloidogyne incognita Minc08580 N 0.731
nasonia_NCBI_hmm1144383 Nasonia vitripennis nasonia_NCBI_hmm1144383 N 0.808
NCU01795 Neurospora crassa NCU01795 N 0.731
PDK_20s1366191g001 Phoenix dactylifera PDK_20s1366191g001 N 0.808
PK12342.1 Cannabis sativa PK12342.1 N 0.808
POPTR_0006s13510 Populus trichocarpa POPTR_0006s13510 N 0.846
ppa007639m Prunus persica ppa007639m N 0.808
ppa007903m Prunus persica ppa007903m N 0.808
Q6DD06 Xenopus laevis Q6DD06 N 0.808
RGD1564243 Rattus norvegicus ENSRNOG00000015276 N 0.769
SB03G039020 Sorghum bicolor Sb03g039020 N 0.846
WUBG_13399 Wuchereria bancrofti WUBG_13399 N 0.731
XM_002883888.1 Arabidopsis lyrata fgenesh2_kg.3__3143__AT2G20280.1 N 0.808
XP_002158150.1 Hydra magnipapillata XP_002158150.1 N 0.731
ZC3H15 Canis familiaris ENSCAFG00000014494 N 0.808
ZC3H15 Tupaia belangeri ENSTBEG00000015530 N 0.808
ZC3H15 Choloepus hoffmanni ENSCHOG00000011958 N 0.808
ZC3H15 Callithrix jacchus ENSCJAG00000005931 N 0.808
zc3h15 Danio rerio ENSDARG00000015889 N 0.769
ZC3H15 Dasypus novemcinctus ENSDNOG00000018840 N 0.769
Zc3h15 Dipodomys ordii ENSDORG00000011664 N 0.808
ZC3H15 Anolis carolinensis ENSACAG00000001916 N 0.769
ZC3H15 Sus scrofa ENSSSCG00000016026 N 0.808
ZC3H15 Sorex araneus ENSSARG00000012071 N 0.808
Zc3h15 Rattus norvegicus ENSRNOG00000005256 N 0.808
ZC3H15 Oryzias latipes ENSORLG00000018606 N 0.769
ZC3H15 Pteropus vampyrus ENSPVAG00000004828 N 0.808
ZC3H15 Pan troglodytes ENSPTRG00000012717 N 0.808
ZC3H15 Procavia capensis ENSPCAG00000008499 N 0.808
ZC3H15 Microcebus murinus ENSMICG00000014245 N 0.808
ZC3H15 Felis catus ENSFCAG00000008213 N 0.808
Zc3h15 Mus musculus ENSMUSG00000027091 N 0.808
ZC3H15 Takifugu rubripes ENSTRUG00000004988 N 0.769
ZC3H15 Tarsius syrichta ENSTSYG00000011019 N 0.808
ZC3H15 Tursiops truncatus ENSTTRG00000012425 N 0.808
ZC3H15 Spermophilus tridecemlineatus ENSSTOG00000006873 N 0.808
ZC3H15 Ornithorhynchus anatinus ENSOANG00000015742 N 0.808
ZC3H15 Otolemur garnettii ENSOGAG00000002182 N 0.808
zc3h15 Xenopus tropicalis ENSXETG00000013336 N 0.769
ZC3H15 Tetraodon nigroviridis ENSTNIG00000009860 N 0.731
ZC3H15 Macaca mulatta ENSMMUG00000017248 N 0.808
ZC3H15 Homo sapiens ENSG00000065548 N 0.808
ZC3H15 Gasterosteus aculeatus ENSGACG00000011648 N 0.769
ZC3H15 Gorilla gorilla ENSGGOG00000000073 N 0.808
ZC3H15 Meleagris gallopavo ENSMGAG00000004447 N 0.808
ZC3H15 Taeniopygia guttata ENSTGUG00000011131 N 0.808
ZC3H15 Myotis lucifugus ENSMLUG00000007741 N 0.808
ZC3H15 Vicugna pacos ENSVPAG00000006980 N 0.808
ZC3HF_BOVIN Bos taurus ENSBTAG00000021762 N 0.808
ZC3HF_CHICK Gallus gallus ENSGALG00000002670 N 0.808
ZYRO0C15598g Zygosaccharomyces rouxii ZYRO0C15598g N 0.731