CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Medtr7g132670
(
Medicago truncatula
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
Medtr7g132670
T05794_0.6
PlantGDB (2010-Oct-15)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Medtr7g132670.1
CCCH ZF
251
277
YQPDICKDYKETGYCGYGDSCKFMHDR
Links
Other
CCCH ZF
family RBPs
Other
Medicago truncatula
RBPs
243 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAH41273
Xenopus laevis
AAH41273
N
0.000
AAH72210
Xenopus laevis
AAH72210
N
0.000
DGIL_AUG5s1009g5t1
Acyrtosiphon pisum
DGIL_AUG5s1009g5t1
N
0.000
estExt_Genewise1Plus.C_20041
Sporobolomyces roseus
estExt_Genewise1Plus.C_20041
N
0.000
estExt_Genewise1Plus.C_70089
Capitella teleta
estExt_Genewise1Plus.C_70089
N
0.000
GF14827
Drosophila ananassae
FBgn0091854
N
0.000
KRR1
Oryzias latipes
ENSORLG00000019616
N
0.000
nasonia_NCBI_hmm386444
Nasonia vitripennis
nasonia_NCBI_hmm386444
N
0.000