Ame_R000168 (Ailuropoda melanoleuca)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 Ame_R000168 T05939_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ZFP36
M350_0.6 		Homo sapiens UUAUUUAWW SELEX
Cook et al.(2011)
951_12324455 		0.741
ZFP36
M269_0.6 		Homo sapiens UUAUUUAWW SELEX
Cook et al.(2011)
221_12324455 		0.741
ZFP36
M268_0.6 		Homo sapiens Sequence logo not available AUUUA RIP-chip
Cook et al.(2011)
194_18256032.1 		0.741
ZFP36
M267_0.6 		Homo sapiens Sequence logo not available UUAUUUAUU RIP-chip
Cook et al.(2011)
194_18256032 		0.741
ZFP36
M266_0.6 		Homo sapiens Sequence logo not available UUGUGS RIP-chip
Cook et al.(2011)
193_18367721.3 		0.741
ZFP36
M265_0.6 		Homo sapiens Sequence logo not available CUUGU RIP-chip
Cook et al.(2011)
193_18367721.2 		0.741
ZFP36
M264_0.6 		Homo sapiens Sequence logo not available HCYUBY RIP-chip
Cook et al.(2011)
193_18367721.1 		0.741
ZFP36
M263_0.6 		Homo sapiens Sequence logo not available AAUAA RIP-chip
Cook et al.(2011)
193_18367721 		0.741
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Ame_R000168 CCCH ZF 133 159
Ame_R000168 CCCH ZF 171 197

Links

Other CCCH ZF family RBPs
Other Ailuropoda melanoleuca RBPs

165 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
138584 Helobdella robusta 138584 N 0.704
153596 Helobdella robusta 153596 N 0.741
64152 Helobdella robusta 64152 N 0.796
A7MB98_BOVIN Bos taurus ENSBTAG00000025434 I 0.926
AAD24208 Xenopus laevis AAD24208 I 0.926
AAD24209 Xenopus laevis AAD24209 I 0.963
AAEL002308 Aedes aegypti AAEL002308 I 0.870
AAH44086 Xenopus laevis AAH44086 I 0.981
AAH84197 Xenopus laevis AAH84197 I 0.926
AAH84221 Xenopus laevis AAH84221 I 0.963
AAI00163 Xenopus laevis AAI00163 I 0.926
AGAP010954 Anopheles gambiae AGAP010954 N 0.852
AMAG_06814 Allomyces macrogynus AMAG_06814 N 0.722
AMAG_15989 Allomyces macrogynus AMAG_15989 N 0.722
amel4_ncbi_hmm10964 Apis mellifera amel4_ncbi_hmm10964 I 0.944
Ame_R004924 Ailuropoda melanoleuca Ame_R004924 I 0.926
Aqu1.221345 Amphimedon queenslandica Aqu1.221345 I 0.778
BAC54909 Xenopus laevis BAC54909 I 0.963
BGIBMGA008337 Bombyx mori BGIBMGA008337 I 0.870
CABZ01070258.1 Danio rerio ENSDARG00000040503 I 0.907
CPIJ018734 Culex quinquefasciatus CPIJ018734 I 0.870
CpipJ_CPIJ018734 Culex pipiens CpipJ_CPIJ018734 I 0.870
DGIL_AUG5s503g12t1 Acyrtosiphon pisum DGIL_AUG5s503g12t1 N 0.000
ENSACAG00000005547 Anolis carolinensis ENSACAG00000005547 I 0.926
ENSCSAVG00000002923 Ciona savignyi ENSCSAVG00000002923 I 0.870
ENSGACG00000008351 Gasterosteus aculeatus ENSGACG00000008351 I 0.741
ENSGACG00000013400 Gasterosteus aculeatus ENSGACG00000013400 I 0.907
ENSORLG00000000589 Oryzias latipes ENSORLG00000000589 I 0.870
ENSORLG00000008378 Oryzias latipes ENSORLG00000008378 I 0.759
ENSPPYG00000005933 Pongo pygmaeus ENSPPYG00000005933 I 0.926
ENSPPYG00000012458 Pongo pygmaeus ENSPPYG00000012458 I 1.000
ENSSSCG00000008460 Sus scrofa ENSSSCG00000008460 I 1.000
ENSTNIG00000019802 Tetraodon nigroviridis ENSTNIG00000019802 I 0.907
ENSTRUG00000003178 Takifugu rubripes ENSTRUG00000003178 I 0.889
estExt_fgenesh2_pg.C_680108 Branchiostoma floridae estExt_fgenesh2_pg.C_680108 I 0.907
e_gw.346.37.1 Nematostella vectensis e_gw.346.37.1 I 0.963
e_gw1.40.110.1 Trichoplax adhaerens e_gw1.40.110.1 I 0.926
e_gw1.45.79.1 Selaginella moellendorfii e_gw1.45.79.1 N 0.704
fgenesh2_pg.C_scaffold_32000041 Selaginella moellendorfii fgenesh2_pg.C_scaffold_32000041 N 0.704
fgenesh2_pg.scaffold_13000206 Monosiga brevicollis fgenesh2_pg.scaffold_13000206 N 0.722
GA17935-RA Drosophila pseudoobscura FBgn0077944 N 0.889
GE17025 Drosophila yakuba FBgn0234511 N 0.870
GF21384 Drosophila ananassae FBgn0098386 N 0.889
GG17735 Drosophila erecta FBgn0109957 N 0.870
GI21684 Drosophila mojavensis FBgn0144414 N 0.852
GJ15863 Drosophila virilis FBgn0203050 N 0.852
GK25600 Drosophila willistoni FBgn0227559 N 0.852
GL13141 Drosophila persimilis FBgn0150747 N 0.889
GM11580 Drosophila sechellia FBgn0166523 N 0.870
gw1.30.59.1 Lottia gigantea gw1.30.59.1 N 0.870
gw1.42.93.1 Daphnia pulex gw1.42.93.1 N 0.926
gw1.534.24.1 Capitella teleta gw1.534.24.1 I 0.852
LOC100063597 Equus caballus ENSECAG00000018860 I 0.926
LOC100386590 Callithrix jacchus ENSCJAG00000014571 I 1.000
LOC100405281 Callithrix jacchus ENSCJAG00000015116 I 0.926
nasonia_NCBI_hmm9264 Nasonia vitripennis nasonia_NCBI_hmm9264 I 0.889
PTSG_01604 Salpingoeca rosetta PTSG_01604 N 0.778
Q1JP65_BOVIN Bos taurus ENSBTAG00000003553 I 1.000
Q4H2G7_CIOIN Ciona intestinalis ENSCING00000014446 I 0.870
Q7ZXW9 Xenopus laevis Q7ZXW9 I 0.981
Q805B4 Xenopus laevis Q805B4 I 0.963
Tis11 Drosophila melanogaster FBgn0011837 N 0.870
TISB_RAT Rattus norvegicus ENSRNOG00000030024 I 0.926
XP_001175665.1 Strongylocentrotus purpuratus XP_001175665.1 I 0.889
XP_001175810.1 Strongylocentrotus purpuratus XP_001175810.1 I 0.889
XP_001178437.1 Strongylocentrotus purpuratus XP_001178437.1 I 0.889
XP_002159721.1 Hydra magnipapillata XP_002159721.1 N 0.907
XP_782811.1 Strongylocentrotus purpuratus XP_782811.1 I 0.889
XR_022888.1 Pan troglodytes ENSPTRG00000030712 I 0.926
ZFP36 Tetraodon nigroviridis ENSTNIG00000000183 I 0.759
ZFP36 Gasterosteus aculeatus ENSGACG00000008344 I 0.833
ZFP36 Takifugu rubripes ENSTRUG00000002023 I 0.833
ZFP36L1 Taeniopygia guttata ENSTGUG00000011494 I 0.963
ZFP36L1 Loxodonta africana ENSLAFG00000028594 I 0.926
ZFP36L1 Gasterosteus aculeatus ENSGACG00000011271 I 0.926
ZFP36L1 Homo sapiens ENSG00000185650 I 0.926
ZFP36L1 Canis familiaris ENSCAFG00000016497 I 0.926
Zfp36l1 Dipodomys ordii ENSDORG00000008348 I 0.926
ZFP36L1 Dasypus novemcinctus ENSDNOG00000005159 I 0.926
ZFP36L1 Cavia porcellus ENSCPOG00000025078 I 0.926
zfp36l1 Xenopus tropicalis ENSXETG00000016987 I 0.926
ZFP36L1 Oryzias latipes ENSORLG00000011106 I 0.926
ZFP36L1 Sus scrofa ENSSSCG00000002302 I 0.926
ZFP36L1 Pteropus vampyrus ENSPVAG00000011686 I 0.926
ZFP36L1 Tetraodon nigroviridis ENSTNIG00000002277 I 0.907
Zfp36l1 Mus musculus ENSMUSG00000021127 I 0.926
ZFP36L1 Takifugu rubripes ENSTRUG00000012295 I 0.926
ZFP36L1 Tarsius syrichta ENSTSYG00000009284 I 0.926
ZFP36L1 Otolemur garnettii ENSOGAG00000010033 N 0.782
ZFP36L1 Macropus eugenii ENSMEUG00000003070 I 0.926
ZFP36L1 Tursiops truncatus ENSTTRG00000003475 I 0.926
ZFP36L1 Procavia capensis ENSPCAG00000005383 I 0.926
ZFP36L1 Spermophilus tridecemlineatus ENSSTOG00000009758 I 0.926
ZFP36L1 Oryctolagus cuniculus ENSOCUG00000003168 I 0.926
zfp36l1a Danio rerio ENSDARG00000016154 I 0.926
zfp36l1b Danio rerio ENSDARG00000021443 I 0.907
ZFP36L2 Procavia capensis ENSPCAG00000010765 I 0.981
Zfp36l2 Rattus norvegicus ENSRNOG00000005067 I 1.000
ZFP36L2 Sus scrofa ENSSSCG00000008461 I 1.000
ZFP36L2 Anolis carolinensis ENSACAG00000014740 I 0.981
ZFP36L2 Microcebus murinus ENSMICG00000010318 I 1.000
ZFP36L2 Canis familiaris ENSCAFG00000002438 I 1.000
ZFP36L2 Tursiops truncatus ENSTTRG00000006356 I 1.000
ZFP36L2 Choloepus hoffmanni ENSCHOG00000005595 N 0.778
ZFP36L2 Pan troglodytes ENSPTRG00000011870 I 1.000
ZFP36L2 Cavia porcellus ENSCPOG00000022038 I 0.981
ZFP36L2 Tupaia belangeri ENSTBEG00000012370 I 1.000
ZFP36L2 Monodelphis domestica ENSMODG00000000407 I 1.000
ZFP36L2 Myotis lucifugus ENSMLUG00000015588 I 1.000
ZFP36L2 Macropus eugenii ENSMEUG00000010649 I 1.000
ZFP36L2 Loxodonta africana ENSLAFG00000004265 I 1.000
ZFP36L2 Gorilla gorilla ENSGGOG00000001402 I 1.000
ZFP36L2 Takifugu rubripes ENSTRUG00000006923 I 0.963
Zfp36l2 Mus musculus ENSMUSG00000045817 I 1.000
ZFP36L2 Homo sapiens ENSG00000152518 I 1.000
ZFP36L2 Felis catus ENSFCAG00000013462 N 0.926
ZFP36L2 Ornithorhynchus anatinus ENSOANG00000002848 I 0.963
zfp36l2 Danio rerio ENSDARG00000021806 I 0.926
ZFP36L2 Tetraodon nigroviridis ENSTNIG00000017103 I 0.926
zfp36l2 Xenopus tropicalis ENSXETG00000009274 I 0.981
Zfp36l3 Rattus norvegicus ENSRNOG00000029788 I 0.833
Zfp36l3 Mus musculus ENSMUSG00000059334 I 0.852
zgc:114130 Danio rerio ENSDARG00000040725 I 0.815