CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GG17735
(
Drosophila erecta
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
FBgn0109957
T03714_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0136281
CCCH ZF
141
167
YKTELCRPFEEAGECKYGEKCQFAHGS
FBpp0136281
CCCH ZF
179
205
YKTEYCRTFHSVGFCPYGPRCHFVHNA
Links
Other
CCCH ZF
family RBPs
Other
Drosophila erecta
RBPs
123 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GM11580
Drosophila sechellia
FBgn0166523
N
1.000
GE17025
Drosophila yakuba
FBgn0234511
N
1.000
Tis11
Drosophila melanogaster
FBgn0011837
N
1.000
GF21384
Drosophila ananassae
FBgn0098386
N
0.981
GL13141
Drosophila persimilis
FBgn0150747
N
0.981
GA17935-RA
Drosophila pseudoobscura
FBgn0077944
N
0.981
GK25600
Drosophila willistoni
FBgn0227559
N
0.963
GI21684
Drosophila mojavensis
FBgn0144414
N
0.963
GJ15863
Drosophila virilis
FBgn0203050
N
0.963
CPIJ018734
Culex quinquefasciatus
CPIJ018734
I
0.944
GH17894
Drosophila grimshawi
FBgn0125362
N
0.944
AAEL002308
Aedes aegypti
AAEL002308
I
0.944
CpipJ_CPIJ018734
Culex pipiens
CpipJ_CPIJ018734
I
0.944
AGAP010954
Anopheles gambiae
AGAP010954
N
0.926
BGIBMGA008337
Bombyx mori
BGIBMGA008337
I
0.926
zfp36l2
Danio rerio
ENSDARG00000021806
I
0.870
ZFP36L2
Cavia porcellus
ENSCPOG00000022038
I
0.870
ZFP36L2
Tupaia belangeri
ENSTBEG00000012370
I
0.870
ZFP36L1
Taeniopygia guttata
ENSTGUG00000011494
I
0.870
ZFP36L2
Pan troglodytes
ENSPTRG00000011870
I
0.870
Q1JP65_BOVIN
Bos taurus
ENSBTAG00000003553
I
0.870
ZFP36L2
Canis familiaris
ENSCAFG00000002438
I
0.870
LOC100386590
Callithrix jacchus
ENSCJAG00000014571
I
0.870
ZFP36L2
Loxodonta africana
ENSLAFG00000004265
I
0.870
ZFP36L2
Monodelphis domestica
ENSMODG00000000407
I
0.870
ZFP36L2
Myotis lucifugus
ENSMLUG00000015588
I
0.870
Zfp36l2
Mus musculus
ENSMUSG00000045817
I
0.870
Zfp36l2
Rattus norvegicus
ENSRNOG00000005067
I
0.870
ENSPPYG00000012458
Pongo pygmaeus
ENSPPYG00000012458
I
0.870
ZFP36L2
Microcebus murinus
ENSMICG00000010318
I
0.870
ZFP36L2
Macropus eugenii
ENSMEUG00000010649
I
0.870
ZFP36L2
Homo sapiens
ENSG00000152518
I
0.870
ENSSSCG00000008460
Sus scrofa
ENSSSCG00000008460
I
0.870
ZFP36L2
Gorilla gorilla
ENSGGOG00000001402
I
0.870
ZFP36L2
Tetraodon nigroviridis
ENSTNIG00000017103
I
0.870
ZFP36L2
Sus scrofa
ENSSSCG00000008461
I
0.870
ZFP36L2
Anolis carolinensis
ENSACAG00000014740
I
0.870
AAD24209
Xenopus laevis
AAD24209
I
0.870
AAH84221
Xenopus laevis
AAH84221
I
0.870
AAH44086
Xenopus laevis
AAH44086
I
0.870
zfp36l2
Xenopus tropicalis
ENSXETG00000009274
I
0.870
ZFP36L2
Takifugu rubripes
ENSTRUG00000006923
I
0.870
BAC54909
Xenopus laevis
BAC54909
I
0.870
ZFP36L2
Tursiops truncatus
ENSTTRG00000006356
I
0.870
Ame_R000168
Ailuropoda melanoleuca
Ame_R000168
I
0.870
Q805B4
Xenopus laevis
Q805B4
I
0.870
Q7ZXW9
Xenopus laevis
Q7ZXW9
I
0.870
ZFP36L1
Tarsius syrichta
ENSTSYG00000009284
I
0.852
ZFP36L1
Tursiops truncatus
ENSTTRG00000003475
I
0.852
ZFP36L1
Macropus eugenii
ENSMEUG00000003070
I
0.852
gw1.534.24.1
Capitella teleta
gw1.534.24.1
I
0.852
ZFP36L1
Gasterosteus aculeatus
ENSGACG00000011271
I
0.852
ZFP36L1
Sus scrofa
ENSSSCG00000002302
I
0.852
TISB_RAT
Rattus norvegicus
ENSRNOG00000030024
I
0.852
Zfp36l1
Mus musculus
ENSMUSG00000021127
I
0.852
gw1.42.93.1
Daphnia pulex
gw1.42.93.1
N
0.852
ZFP36L1
Loxodonta africana
ENSLAFG00000028594
I
0.852
ZFP36L1
Oryctolagus cuniculus
ENSOCUG00000003168
I
0.852
ZFP36L1
Procavia capensis
ENSPCAG00000005383
I
0.852
ZFP36L2
Procavia capensis
ENSPCAG00000010765
I
0.852
ENSPPYG00000005933
Pongo pygmaeus
ENSPPYG00000005933
I
0.852
zfp36l1
Xenopus tropicalis
ENSXETG00000016987
I
0.852
ZFP36L1
Oryzias latipes
ENSORLG00000011106
I
0.852
XR_022888.1
Pan troglodytes
ENSPTRG00000030712
I
0.852
Zfp36l3
Mus musculus
ENSMUSG00000059334
I
0.852
ZFP36L2
Ornithorhynchus anatinus
ENSOANG00000002848
I
0.852
ZFP36L1
Takifugu rubripes
ENSTRUG00000012295
I
0.852
ZFP36L1
Pteropus vampyrus
ENSPVAG00000011686
I
0.852
e_gw.346.37.1
Nematostella vectensis
e_gw.346.37.1
I
0.852
Zfp36l1
Dipodomys ordii
ENSDORG00000008348
I
0.852
ZFP36L1
Homo sapiens
ENSG00000185650
I
0.852
ENSACAG00000005547
Anolis carolinensis
ENSACAG00000005547
I
0.852
zfp36l1a
Danio rerio
ENSDARG00000016154
I
0.852
ZFP36L1
Cavia porcellus
ENSCPOG00000025078
I
0.852
LOC100405281
Callithrix jacchus
ENSCJAG00000015116
I
0.852
ZFP36L1
Canis familiaris
ENSCAFG00000016497
I
0.852
AAD24208
Xenopus laevis
AAD24208
I
0.852
AAH84197
Xenopus laevis
AAH84197
I
0.852
zfp36l1b
Danio rerio
ENSDARG00000021443
I
0.852
AAI00163
Xenopus laevis
AAI00163
I
0.852
LOC100063597
Equus caballus
ENSECAG00000018860
I
0.852
Ame_R004924
Ailuropoda melanoleuca
Ame_R004924
I
0.852
ZFP36L1
Dasypus novemcinctus
ENSDNOG00000005159
I
0.852
ZFP36L1
Spermophilus tridecemlineatus
ENSSTOG00000009758
I
0.852
A7MB98_BOVIN
Bos taurus
ENSBTAG00000025434
I
0.852
nasonia_NCBI_hmm9264
Nasonia vitripennis
nasonia_NCBI_hmm9264
I
0.852
ZFP36L1
Tetraodon nigroviridis
ENSTNIG00000002277
I
0.833
amel4_ncbi_hmm10964
Apis mellifera
amel4_ncbi_hmm10964
I
0.833
XP_001178437.1
Strongylocentrotus purpuratus
XP_001178437.1
I
0.833
zgc:114130
Danio rerio
ENSDARG00000040725
I
0.833
XP_001175665.1
Strongylocentrotus purpuratus
XP_001175665.1
I
0.833
XP_001175810.1
Strongylocentrotus purpuratus
XP_001175810.1
I
0.833
XP_782811.1
Strongylocentrotus purpuratus
XP_782811.1
I
0.833
estExt_fgenesh2_pg.C_680108
Branchiostoma floridae
estExt_fgenesh2_pg.C_680108
I
0.833
ENSTRUG00000003178
Takifugu rubripes
ENSTRUG00000003178
I
0.815
CABZ01070258.1
Danio rerio
ENSDARG00000040503
I
0.815
ENSCSAVG00000002923
Ciona savignyi
ENSCSAVG00000002923
I
0.815
e_gw1.40.110.1
Trichoplax adhaerens
e_gw1.40.110.1
I
0.815
XP_002159721.1
Hydra magnipapillata
XP_002159721.1
N
0.815
ZFP36L2
Felis catus
ENSFCAG00000013462
N
0.815
Q4H2G7_CIOIN
Ciona intestinalis
ENSCING00000014446
I
0.815
ENSGACG00000013400
Gasterosteus aculeatus
ENSGACG00000013400
I
0.815
ENSORLG00000000589
Oryzias latipes
ENSORLG00000000589
I
0.796
gw1.30.59.1
Lottia gigantea
gw1.30.59.1
N
0.796
Zfp36l3
Rattus norvegicus
ENSRNOG00000029788
I
0.796
ENSTNIG00000019802
Tetraodon nigroviridis
ENSTNIG00000019802
I
0.796
ZFP36
Gasterosteus aculeatus
ENSGACG00000008344
I
0.796
ZFP36
Takifugu rubripes
ENSTRUG00000002023
I
0.796
153596
Helobdella robusta
153596
N
0.759
Aqu1.221345
Amphimedon queenslandica
Aqu1.221345
I
0.759
138584
Helobdella robusta
138584
N
0.741
64152
Helobdella robusta
64152
N
0.741
ENSORLG00000008378
Oryzias latipes
ENSORLG00000008378
I
0.741
PTSG_01604
Salpingoeca rosetta
PTSG_01604
N
0.722
ENSGACG00000008351
Gasterosteus aculeatus
ENSGACG00000008351
I
0.722
ZFP36
Tetraodon nigroviridis
ENSTNIG00000000183
I
0.722
ZFP36L1
Otolemur garnettii
ENSOGAG00000010033
N
0.709
AMAG_15989
Allomyces macrogynus
AMAG_15989
N
0.704
ZFP36
Danio rerio
ENSDARG00000044395
I
0.704
AMAG_06814
Allomyces macrogynus
AMAG_06814
N
0.704
EFA80829.1
Polysphondylium pallidum
EFA80829.1
I
0.704
fgenesh2_pg.scaffold_13000206
Monosiga brevicollis
fgenesh2_pg.scaffold_13000206
N
0.704
estExt_fgeneshDP_kg.C_230001
Dictyostelium purpureum
estExt_fgeneshDP_kg.C_230001
I
0.704