LOC_Os12g35150 (Oryza sativa)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 LOC_Os12g35150 T12643_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os12g35150.1 CCHC ZF 365 382

Links

Other CCHC ZF family RBPs
Other Oryza sativa RBPs

70 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29889.m003353 Ricinus communis 29889.m003353 N 0.000
B9HIJ8_POPTR Populus trichocarpa POPTR_0008s10060 N 0.000
BGIOSIBCE036979 Oryza indica BGIOSIBCE036979 N 0.000
BRADI4G04650 Brachypodium distachyon BRADI4G04650 N 0.000
cassava22294.valid.m1 Manihot esculenta cassava22294.valid.m1 N 0.000
Cucsa.135100 Cucumis sativus Cucsa.135100 N 0.722
emb1441 Arabidopsis thaliana AT5G49930-TAIR-G N 0.000
e_gw1.117.3.1 Physcomitrella patens e_gw1.117.3.1 N 0.000
Glyma09g03670.1 Glycine max Glyma09g03670.1 N 0.000
Glyma15g14560.1 Glycine max Glyma15g14560.1 N 0.000
GRMZM2G038516 Zea mays GRMZM2G038516 N 0.000
GRMZM2G063544 Zea mays GRMZM2G063544 N 0.000
GSVIVG00034941001 Vitis vinifera GSVIVG00034941001 N 0.000
LjSGA_011995.1 Lotus japonicus LjSGA_011995.1 N 0.000
LOC_Os12g37720 Oryza sativa LOC_Os12g37720 N 0.000
MDP0000306612 Malus x domestica MDP0000306612 N 0.000
mgf009291m Mimulus guttatus mgf009291m N 0.000
PDK_20s1341991g003 Phoenix dactylifera PDK_20s1341991g003 N 0.000
PK11905.1 Cannabis sativa PK11905.1 N 0.000
ppa000469m Prunus persica ppa000469m N 0.000
SB08G018400 Sorghum bicolor Sb08g018400 N 0.000
XM_002865719.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8000738 N 0.000
XP_001179009.1 Strongylocentrotus purpuratus XP_001179009.1 N 0.000
XP_001193544.1 Strongylocentrotus purpuratus XP_001193544.1 N 0.000