PUM1 (Bos taurus)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 ENSBTAG00000018979 T24160_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PUM1
M255_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1182_18411299 		0.996
PUM1
M283_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
309_18776931 		0.996
Pum2
M287_0.6 		Mus musculus UGUANAUARNNNNBBBBSCC SELEX
Cook et al.(2011)
330_11780640 		0.895
Pum2
M286_0.6 		Mus musculus UGUA SELEX
Cook et al.(2011)
329_11780640 		0.895
PUM2
M284_0.6 		Homo sapiens Sequence logo not available GNNNNNNNNNNNUGUA yeast three-hybrid s
Cook et al.(2011)
320_15607425 		0.895
PUM2
M280_0.6 		Homo sapiens Sequence logo not available UGUANAUA PAR-clip
Cook et al.(2011)
278_20371350 		0.895
PUM2
M249_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1147_18776931 		0.895
pum
M100_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00104 		0.781
pum
M099_0.6 		Drosophila melanogaster UGUAMRK RNAcompete
Ray et al.(2013)
RNCMPT00103 		0.781
pum
M285_0.6 		Drosophila melanogaster Sequence logo not available HHUGUAHAUAHDHWDD RIP-chip
Cook et al.(2011)
323_16537387 		0.781
pum
M098_0.6 		Drosophila melanogaster UGUAYAK RNAcompete
Ray et al.(2013)
RNCMPT00102 		0.781
pum
M101_0.6 		Drosophila melanogaster UGUAWDU RNAcompete
Ray et al.(2013)
RNCMPT00105 		0.781
pum
M097_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00101 		0.781
pum
M045_0.6 		Drosophila melanogaster UGUAHAK RNAcompete
Ray et al.(2013)
RNCMPT00046 		0.781
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSBTAP00000025262 PUF 849 883
ENSBTAP00000025262 PUF 885 917
ENSBTAP00000025262 PUF 921 955
ENSBTAP00000025262 PUF 957 991
ENSBTAP00000025262 PUF 993 1027
ENSBTAP00000025262 PUF 1029 1063
ENSBTAP00000025262 PUF 1065 1095
ENSBTAP00000025262 PUF 1111 1142

Links

Other PUF family RBPs
Other Bos taurus RBPs

88 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R000861 Ailuropoda melanoleuca Ame_R000861 N 0.000
D3ZUL8_RAT Rattus norvegicus ENSRNOG00000001243 N 0.000
ENSPPYG00000005068 Pongo pygmaeus ENSPPYG00000005068 N 0.000
Q6DD45 Xenopus laevis Q6DD45 N 0.000
ZCCHC8 Oryctolagus cuniculus ENSOCUG00000013759 N 0.000
ZCCHC8 Ornithorhynchus anatinus ENSOANG00000006199 N 0.000
ZCCHC8 Oryzias latipes ENSORLG00000005990 N 0.000
ZCCHC8 Procavia capensis ENSPCAG00000016551 N 0.000
Zcchc8 Mus musculus ENSMUSG00000029427 N 0.000
ZCCHC8 Ochotona princeps ENSOPRG00000013758 N 0.000
ZCCHC8 Pan troglodytes ENSPTRG00000005579 N 0.000
ZCCHC8 Pteropus vampyrus ENSPVAG00000001276 N 0.000
ZCCHC8 Sorex araneus ENSSARG00000003982 N 0.000
ZCCHC8 Sus scrofa ENSSSCG00000009792 N 0.000
ZCCHC8 Spermophilus tridecemlineatus ENSSTOG00000001683 N 0.000
ZCCHC8 Taeniopygia guttata ENSTGUG00000006286 N 0.000
ZCCHC8 Tursiops truncatus ENSTTRG00000015809 N 0.000
zcchc8 Xenopus tropicalis ENSXETG00000007797 N 0.000
ZCCHC8 Monodelphis domestica ENSMODG00000012264 N 0.000
ZCCHC8 Macaca mulatta ENSMMUG00000013643 N 0.000
ZCCHC8 Bos taurus ENSBTAG00000006114 N 0.000
ZCCHC8 Canis familiaris ENSCAFG00000007859 N 0.000
ZCCHC8 Callithrix jacchus ENSCJAG00000020409 N 0.000
ZCCHC8 Cavia porcellus ENSCPOG00000014385 N 0.000
ZCCHC8 Dasypus novemcinctus ENSDNOG00000008881 N 0.000
Zcchc8 Dipodomys ordii ENSDORG00000008756 N 0.000
ZCCHC8 Equus caballus ENSECAG00000006984 N 0.000
ZCCHC8 Echinops telfairi ENSETEG00000004735 N 0.000
ZCCHC8 Felis catus ENSFCAG00000010608 N 0.000
ZCCHC8 Homo sapiens ENSG00000033030 N 0.000
ZCCHC8 Gallus gallus ENSGALG00000004486 N 0.000
ZCCHC8 Gorilla gorilla ENSGGOG00000027926 N 0.000
ZCCHC8 Loxodonta africana ENSLAFG00000016477 N 0.000
ZCCHC8 Macropus eugenii ENSMEUG00000003497 N 0.000
ZCCHC8 Meleagris gallopavo ENSMGAG00000004799 N 0.000
ZCCHC8 Microcebus murinus ENSMICG00000013486 N 0.000
ZCCHC8 Myotis lucifugus ENSMLUG00000005334 N 0.000
ZCCHC8 Anolis carolinensis ENSACAG00000001545 N 0.000