CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PUM1
(
Bos taurus
)
PUF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00806 (PUF)
IPR001313
ENSBTAG00000018979
T24160_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
PUM1
M283_0.6
Homo sapiens
Sequence logo not available
UGUAHAUA
RIP-chip
Cook et al.(2011)
309_18776931
0.996
PUM1
M255_0.6
Homo sapiens
Sequence logo not available
UGUAHAUA
RIP-chip
Cook et al.(2011)
1182_18411299
0.996
PUM2
M284_0.6
Homo sapiens
Sequence logo not available
GNNNNNNNNNNNUGUA
yeast three-hybrid s
Cook et al.(2011)
320_15607425
0.895
PUM2
M280_0.6
Homo sapiens
Sequence logo not available
UGUANAUA
PAR-clip
Cook et al.(2011)
278_20371350
0.895
PUM2
M249_0.6
Homo sapiens
Sequence logo not available
UGUAHAUA
RIP-chip
Cook et al.(2011)
1147_18776931
0.895
Pum2
M287_0.6
Mus musculus
UGUANAUARNNNNBBBBSCC
SELEX
Cook et al.(2011)
330_11780640
0.895
Pum2
M286_0.6
Mus musculus
UGUA
SELEX
Cook et al.(2011)
329_11780640
0.895
pum
M100_0.6
Drosophila melanogaster
UGUAMAK
RNAcompete
Ray et al.(2013)
RNCMPT00104
0.781
pum
M099_0.6
Drosophila melanogaster
UGUAMRK
RNAcompete
Ray et al.(2013)
RNCMPT00103
0.781
pum
M285_0.6
Drosophila melanogaster
Sequence logo not available
HHUGUAHAUAHDHWDD
RIP-chip
Cook et al.(2011)
323_16537387
0.781
pum
M098_0.6
Drosophila melanogaster
UGUAYAK
RNAcompete
Ray et al.(2013)
RNCMPT00102
0.781
pum
M101_0.6
Drosophila melanogaster
UGUAWDU
RNAcompete
Ray et al.(2013)
RNCMPT00105
0.781
pum
M097_0.6
Drosophila melanogaster
UGUAMAK
RNAcompete
Ray et al.(2013)
RNCMPT00101
0.781
pum
M045_0.6
Drosophila melanogaster
UGUAHAK
RNAcompete
Ray et al.(2013)
RNCMPT00046
0.781
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSBTAP00000025262
PUF
849
883
EIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVF
ENSBTAP00000025262
PUF
885
917
EILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLA
ENSBTAP00000025262
PUF
921
955
RIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMV
ENSBTAP00000025262
PUF
957
991
ELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFII
ENSBTAP00000025262
PUF
993
1027
AFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPIL
ENSBTAP00000025262
PUF
1029
1063
ELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIV
ENSBTAP00000025262
PUF
1065
1095
EIRGNVLVLSQHKFASNVVEKCVTHASRTER
ENSBTAP00000025262
PUF
1111
1142
SALYTMMKDQYANYVVQKMIDVAEPAQRKIVM
Links
Other
PUF
family RBPs
Other
Bos taurus
RBPs
88 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ENSPPYG00000001621
Pongo pygmaeus
ENSPPYG00000001621
I
0.996
PUM1
Homo sapiens
ENSG00000134644
D
0.996
Q3YAQ1_MACMU
Macaca mulatta
ENSMMUG00000013520
I
0.996
PUM1
Equus caballus
ENSECAG00000021369
I
0.993
Ame_R012380
Ailuropoda melanoleuca
Ame_R012380
I
0.989
Pum1
Mus musculus
ENSMUSG00000028580
I
0.989
Pum1
Rattus norvegicus
ENSRNOG00000011709
I
0.989
PUM1
Vicugna pacos
ENSVPAG00000005902
I
0.989
PUM1
Canis familiaris
ENSCAFG00000011205
I
0.989
LOC100415491
Callithrix jacchus
ENSCJAG00000006035
I
0.985
PUM1
Loxodonta africana
ENSLAFG00000003178
I
0.985
PUM1
Sorex araneus
ENSSARG00000003055
I
0.985
PUM1
Pan troglodytes
ENSPTRG00000000453
I
0.985
PUM1
Sus scrofa
ENSSSCG00000003591
I
0.985
PUM1
Erinaceus europaeus
ENSEEUG00000003871
I
0.985
PUM1
Oryctolagus cuniculus
ENSOCUG00000008641
I
0.985
PUM1
Tursiops truncatus
ENSTTRG00000007436
I
0.978
PUM1
Pteropus vampyrus
ENSPVAG00000005207
I
0.978
PUM1
Monodelphis domestica
ENSMODG00000017067
I
0.975
PUM1
Anolis carolinensis
ENSACAG00000000682
I
0.975
PUM1
Microcebus murinus
ENSMICG00000007713
I
0.967
PUM1
Meleagris gallopavo
ENSMGAG00000000724
I
0.964
PUM1_CHICK
Gallus gallus
ENSGALG00000000597
I
0.964
BAC57980
Xenopus laevis
BAC57980
I
0.960
AAH80379
Xenopus laevis
AAH80379
I
0.960
AAL14121
Xenopus laevis
AAL14121
I
0.956
PUM1
Oryzias latipes
ENSORLG00000011482
I
0.938
BAB20864
Xenopus laevis
BAB20864
I
0.935
PUM1
Takifugu rubripes
ENSTRUG00000013121
I
0.934
PUM1
Gasterosteus aculeatus
ENSGACG00000005717
I
0.934
PUM1
Tetraodon nigroviridis
ENSTNIG00000016983
I
0.915
PUM2
Callithrix jacchus
ENSCJAG00000007450
I
0.905
PUM2
Taeniopygia guttata
ENSTGUG00000013149
I
0.905
PUM2
Equus caballus
ENSECAG00000021930
I
0.905
PUM2
Bos taurus
ENSBTAG00000011155
I
0.905
PUM2
Homo sapiens
ENSG00000055917
D
0.905
PUM2
Sus scrofa
ENSSSCG00000008600
I
0.905
Q2VB18_CHICK
Gallus gallus
ENSGALG00000016481
I
0.905
PUM2
Oryctolagus cuniculus
ENSOCUG00000017908
I
0.905
ENSOANG00000003230
Ornithorhynchus anatinus
ENSOANG00000003230
I
0.905
Pum2
Mus musculus
ENSMUSG00000020594
D
0.905
ENSPPYG00000012617
Pongo pygmaeus
ENSPPYG00000012617
I
0.905
Pum2
Rattus norvegicus
ENSRNOG00000006180
I
0.902
PUM2
Cavia porcellus
ENSCPOG00000007075
I
0.898
PUM2
Vicugna pacos
ENSVPAG00000005056
I
0.895
PUM2
Pan troglodytes
ENSPTRG00000011692
I
0.895
PUM2
Gorilla gorilla
ENSGGOG00000011374
I
0.895
PUM2
Loxodonta africana
ENSLAFG00000009278
I
0.895
Ame_R002800
Ailuropoda melanoleuca
Ame_R002800
I
0.895
PUM2
Meleagris gallopavo
ENSMGAG00000014040
I
0.895
PUM2
Canis familiaris
ENSCAFG00000003839
I
0.895
PUM2
Tupaia belangeri
ENSTBEG00000008729
I
0.891
PUM2
Anolis carolinensis
ENSACAG00000010491
I
0.887
PUM2
Tarsius syrichta
ENSTSYG00000014463
I
0.873
pum2
Xenopus tropicalis
ENSXETG00000008903
I
0.872
PUM2
Takifugu rubripes
ENSTRUG00000018167
I
0.872
PUM2
Tursiops truncatus
ENSTTRG00000004887
I
0.869
PUM2
Monodelphis domestica
ENSMODG00000009811
I
0.865
PUM2
Gasterosteus aculeatus
ENSGACG00000009670
I
0.865
PUM2
Oryzias latipes
ENSORLG00000012611
I
0.862
XP_001187223.1
Strongylocentrotus purpuratus
XP_001187223.1
I
0.817
XP_794621.2
Strongylocentrotus purpuratus
XP_794621.2
I
0.817
e_gw.54.41.1
Nematostella vectensis
e_gw.54.41.1
I
0.812
PASA_GEN_0800110
Daphnia pulex
PASA_GEN_0800110
I
0.796
estExt_Genewise1Plus.C_4390035
Capitella teleta
estExt_Genewise1Plus.C_4390035
I
0.795
PHUM490070
Pediculus humanus
PHUM490070
I
0.791
nasonia_NCBI_hmm823294
Nasonia vitripennis
nasonia_NCBI_hmm823294
I
0.788
estExt_Genewise1Plus.C_sca_670070
Lottia gigantea
estExt_Genewise1Plus.C_sca_670070
I
0.783
pum
Drosophila melanogaster
FBgn0003165
D
0.781
GM26283
Drosophila sechellia
FBgn0181138
I
0.781
amel4_ncbi_hmm4895
Apis mellifera
amel4_ncbi_hmm4895
I
0.778
GG17394
Drosophila erecta
FBgn0109620
I
0.777
CpipJ_CPIJ016844
Culex pipiens
CpipJ_CPIJ016844
I
0.777
GF18428
Drosophila ananassae
FBgn0095446
I
0.777
AAEL012420
Aedes aegypti
AAEL012420
I
0.777
GK14049
Drosophila willistoni
FBgn0216055
I
0.777
GE24797
Drosophila yakuba
FBgn0241899
I
0.777
CPIJ016844
Culex quinquefasciatus
CPIJ016844
I
0.777
GI22503
Drosophila mojavensis
FBgn0145231
I
0.773
GA27465-RA
Drosophila pseudoobscura
FBgn0248832
I
0.773
GH15257
Drosophila grimshawi
FBgn0122732
I
0.773
AGAP003914
Anopheles gambiae
AGAP003914
I
0.773
GJ10105
Drosophila virilis
FBgn0197393
I
0.770
DGIL_AUG5s1082g1t1
Acyrtosiphon pisum
DGIL_AUG5s1082g1t1
I
0.766
BGIBMGA003401
Bombyx mori
BGIBMGA003401
I
0.766
GL22345
Drosophila persimilis
FBgn0159937
I
0.766
ENSCING00000003888
Ciona intestinalis
ENSCING00000003888
I
0.764
e_gw1.9.429.1
Trichoplax adhaerens
e_gw1.9.429.1
I
0.763