fgenesh1_pm.C_chr_3000287 (Mycosphaerella graminicola)
PUF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF)
PF00076 (RRM_1) 		IPR001313
IPR000504 		fgenesh1_pm.C_chr_3000287 T25363_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pm.C_chr_3000287 RRM 449 511
fgenesh1_pm.C_chr_3000287 PUF 658 692
fgenesh1_pm.C_chr_3000287 PUF 694 729
fgenesh1_pm.C_chr_3000287 PUF 731 764
fgenesh1_pm.C_chr_3000287 PUF 767 801
fgenesh1_pm.C_chr_3000287 PUF 810 838

Links

Other PUF,RRM family RBPs
Other Mycosphaerella graminicola RBPs

41 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ACLA_089090 Aspergillus clavatus CADACLAG00008911 N 0.776
AFLA_129760 Aspergillus flavus CADAFLAG00010034 N 0.741
AFUA_2G05610 Aspergillus fumigatus CADAFUAG00003379 N 0.767
An02g13940 Aspergillus niger CADANGAG00002920 N 0.756
ANIA_07474 Aspergillus nidulans CADANIAG00000567 N 0.731
AO090001000672 Aspergillus oryzae CADAORAG00000614 N 0.741
ARB_03872 Arthroderma benhamiae ARB_03872 N 0.735
ATEG_06748 Aspergillus terreus CADATEAG00008207 N 0.739
BDBG_08030 Blastomyces dermatitidis BDBG_08030 N 0.739
CHGG_03262 Chaetomium globosum CHGG_03262 N 0.710
CIMG_00764 Coccidioides immitis CIMG_00764 N 0.739
CPSG_07974 Coccidioides posadasii CPSG_07974 N 0.739
EAT78761.1 Phaeosphaeria nodorum EAT78761.1 N 0.753
estExt_fgenesh1_pm.C_60200 Neurospora tetrasperma estExt_fgenesh1_pm.C_60200 N 0.714
estExt_fgenesh3_pm.C_50632 Neurospora discreta estExt_fgenesh3_pm.C_50632 N 0.718
estExt_Genewise1Plus.C_10494 Cochliobolus heterostrophus C5 estExt_Genewise1Plus.C_10494 N 0.723
estExt_Genewise1Plus.C_40921 Myceliophthora thermophila estExt_Genewise1Plus.C_40921 N 0.706
e_gw1.3.863.1 Nectria haematococca e_gw1.3.863.1 N 0.718
fgenesh1_pm.00082_#_71 Aspergillus carbonarius fgenesh1_pm.00082_#_71 N 0.744
FGSG_13028 Fusarium graminearum FGSG_13028 N 0.706
GLRG_00145 Colletotrichum graminicola GLRG_00145 N 0.710
GSTUMT00008056001 Tuber melanosporum GSTUMT00008056001 N 0.739
HCAG_00994 Histoplasma capsulatum HCAG_00994 N 0.735
MCYG_03539 Microsporum canis MCYG_03539 N 0.735
MGG_06318 Magnaporthe oryzae MGG_06318 N 0.720
MGYG_03148 Microsporum gypseum MGYG_03148 N 0.735
NCU06199 Neurospora crassa NCU06199 N 0.714
NFIA_082330 Neosartorya fischeri CADNFIAG00006734 N 0.752
PABG_04750 Paracoccidioides brasiliensis PABG_04750 N 0.748
Pc22g08770 Penicillium chrysogenum Pc22g08770 N 0.761
PMAA_071510 Penicillium marneffei PMAA_071510 N 0.748
PTRG_10794 Pyrenophora tritici repentis PTRG_10794 N 0.727
SNOG_13737 Stagonospora nodorum SNOG_13737 N 0.753
SS1G_13666 Sclerotinia sclerotiorum SS1G_13666 N 0.702
TEQG_01260 Trichophyton equinum TEQG_01260 N 0.735
TERG_04970 Trichophyton rubrum TERG_04970 N 0.735
TESG_05413 Trichophyton tonsurans TESG_05413 N 0.735
TRV_06639 Trichophyton verrucosum TRV_06639 N 0.731
UREG_00739 Uncinocarpus reesii UREG_00739 N 0.727
VDAG_05840 Verticillium dahliae VDAG_05840 N 0.714
VDBG_06774 Verticillium albo atrum VDBG_06774 N 0.714