RBM39 (Cavia porcellus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCPOG00000014625 T35870_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCPOP00000013178 RRM 132 201
ENSCPOP00000013178 RRM 230 300
ENSCPOP00000013178 RRM 418 473

Links

Other RRM family RBPs
Other Cavia porcellus RBPs

50 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAEL005046 Aedes aegypti AAEL005046 N 0.703
AAH75146 Xenopus laevis AAH75146 N 0.884
AAH77813 Xenopus laevis AAH77813 N 0.889
amel4_ncbi_hmm11379 Apis mellifera amel4_ncbi_hmm11379 N 0.716
Ame_R004270 Ailuropoda melanoleuca Ame_R004270 N 0.925
B0KWM7_CALJA Callithrix jacchus ENSCJAG00000017535 N 0.925
B7NZJ5_RABIT Oryctolagus cuniculus ENSOCUG00000007050 N 0.925
CPIJ014704 Culex quinquefasciatus CPIJ014704 N 0.710
CPIJ019416 Culex quinquefasciatus CPIJ019416 N 0.710
CpipJ_CPIJ014704 Culex pipiens CpipJ_CPIJ014704 N 0.710
CpipJ_CPIJ019416 Culex pipiens CpipJ_CPIJ019416 N 0.710
ENSCPOG00000021775 Cavia porcellus ENSCPOG00000021775 N 0.844
ENSPPYG00000010963 Pongo pygmaeus ENSPPYG00000010963 N 0.925
estExt_Genewise1Plus.C_150014 Daphnia pulex estExt_Genewise1Plus.C_150014 N 0.700
PHUM394230 Pediculus humanus PHUM394230 N 0.711
Q2HJD8_BOVIN Bos taurus ENSBTAG00000003949 N 0.925
RBM23 Oryzias latipes ENSORLG00000010370 N 0.824
RBM23 Tetraodon nigroviridis ENSTNIG00000005223 N 0.734
RBM23 Tetraodon nigroviridis ENSTNIG00000017904 N 0.829
RBM23 Takifugu rubripes ENSTRUG00000011352 N 0.824
RBM23 Gasterosteus aculeatus ENSGACG00000002797 N 0.807
RBM23 Gasterosteus aculeatus ENSGACG00000003376 N 0.819
RBM23 Oryzias latipes ENSORLG00000009919 N 0.839
RBM39 Sorex araneus ENSSARG00000007673 N 0.925
Rbm39 Rattus norvegicus ENSRNOG00000019848 N 0.925
RBM39 Sus scrofa ENSSSCG00000007309 N 0.925
RBM39 Taeniopygia guttata ENSTGUG00000003048 N 0.925
RBM39 Tarsius syrichta ENSTSYG00000005605 N 0.925
RBM39 Tursiops truncatus ENSTTRG00000017039 N 0.925
rbm39 Xenopus tropicalis ENSXETG00000007434 N 0.894
RBM39 Tupaia belangeri ENSTBEG00000017320 N 0.799
RBM39 Pteropus vampyrus ENSPVAG00000014944 N 0.925
RBM39 Pan troglodytes ENSPTRG00000013449 N 0.925
RBM39 Gallus gallus ENSGALG00000001550 N 0.925
RBM39 Canis familiaris ENSCAFG00000008327 N 0.925
RBM39 Dasypus novemcinctus ENSDNOG00000025219 N 0.714
RBM39 Equus caballus ENSECAG00000013423 N 0.925
RBM39 Echinops telfairi ENSETEG00000016295 N 0.829
RBM39 Homo sapiens ENSG00000131051 N 0.925
RBM39 Gorilla gorilla ENSGGOG00000003950 N 0.899
RBM39 Loxodonta africana ENSLAFG00000010346 N 0.925
RBM39 Meleagris gallopavo ENSMGAG00000001509 N 0.920
RBM39 Microcebus murinus ENSMICG00000001668 N 0.925
RBM39 Monodelphis domestica ENSMODG00000001557 N 0.915
Rbm39 Mus musculus ENSMUSG00000027620 N 0.925
RBM39 Otolemur garnettii ENSOGAG00000011227 N 0.859
RBM39 Procavia capensis ENSPCAG00000008764 N 0.829
RBM39 Anolis carolinensis ENSACAG00000006436 N 0.920
rbm39a Danio rerio ENSDARG00000011613 N 0.834
rbm39b Danio rerio ENSDARG00000041853 N 0.829