PABPC5 (Homo sapiens)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSG00000174740 T37319_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC5
M162_0.6		 Homo sapiens AGAAADU RNAcompete
Ray et al.(2013)
RNCMPT00171 		(Direct)

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M162_0.6 RRM 20 90
M162_0.6 RRM 108 176
M162_0.6 RRM 201 270
M162_0.6 RRM 304 372

RNA Binding Domains

Protein ID Domain From To Sequence
ENSP00000308012 RRM 20 90
ENSP00000308012 RRM 108 176
ENSP00000308012 RRM 201 270
ENSP00000308012 RRM 304 372
ENSP00000362197 RRM 37 106
ENSP00000362197 RRM 140 208
ENSP00000385644 RRM 20 90
ENSP00000385644 RRM 108 176
ENSP00000385644 RRM 201 270
ENSP00000385644 RRM 304 372

Links

Other RRM family RBPs
Other Homo sapiens RBPs

20 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PDK_20s1611671g001 Phoenix dactylifera PDK_20s1611671g001 N 0.000
POPTR_0011s14160 Populus trichocarpa POPTR_0011s14160 N 0.000