CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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HNRNPH3
(
Meleagris gallopavo
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSMGAG00000003795
T38342_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMGAP00000003541
RRM
20
89
VRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTLDYQGRSTGEAFVQFASKEIAENALGKHKERIGHRYIE
ENSMGAP00000003541
RRM
180
243
EXPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKNHMQHRYIE
Links
Other
RRM
family RBPs
Other
Meleagris gallopavo
RBPs
44 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
A2VDK5_BOVIN
Bos taurus
ENSBTAG00000021046
I
0.000
AAA96942
Xenopus laevis
AAA96942
I
0.000
AAA96943
Xenopus laevis
AAA96943
I
0.000
AAA96944
Xenopus laevis
AAA96944
I
0.000
AAA96945
Xenopus laevis
AAA96945
I
0.000
AAEL006675
Aedes aegypti
AAEL006675
I
0.000
AAH43735
Xenopus laevis
AAH43735
I
0.000
AAH56021
Xenopus laevis
AAH56021
I
0.000
AAH86269
Xenopus laevis
AAH86269
I
0.000
AAH94189
Xenopus laevis
AAH94189
I
0.000
AAH99348
Xenopus laevis
AAH99348
I
0.000
AAI16460
Xenopus laevis
AAI16460
I
0.000
AAI69769
Xenopus laevis
AAI69769
I
0.000
AAI70539
Xenopus laevis
AAI70539
I
0.000
AGAP000965
Anopheles gambiae
AGAP000965
I
0.000
amel4_ncbi_hmm5219
Apis mellifera
amel4_ncbi_hmm5219
I
0.000
Ame_R004766
Ailuropoda melanoleuca
Ame_R004766
I
0.000
Ame_R009570
Ailuropoda melanoleuca
Ame_R009570
I
0.000
Ame_R009760
Ailuropoda melanoleuca
Ame_R009760
I
0.000
Ame_R010167
Ailuropoda melanoleuca
Ame_R010167
I
0.000
CAA59430
Xenopus laevis
CAA59430
I
0.000
CBF67567
Xenopus laevis
CBF67567
I
0.000
CBU92440
Xenopus laevis
CBU92440
I
0.000
CPIJ000395
Culex quinquefasciatus
CPIJ000395
I
0.000
CPIJ016143
Culex quinquefasciatus
CPIJ016143
I
0.000
CpipJ_CPIJ000395
Culex pipiens
CpipJ_CPIJ000395
I
0.000
CpipJ_CPIJ016143
Culex pipiens
CpipJ_CPIJ016143
I
0.000
D7R608_RABIT
Oryctolagus cuniculus
ENSOCUG00000015871
I
0.000
DGIL_AUG5s1005g4t1
Acyrtosiphon pisum
DGIL_AUG5s1005g4t1
I
0.000
ELAVL1
Gorilla gorilla
ENSGGOG00000006100
I
0.000
ELAVL1
Oryzias latipes
ENSORLG00000012435
I
0.000
ELAVL1
Pan troglodytes
ENSPTRG00000010413
I
0.000
ELAVL1
Gasterosteus aculeatus
ENSGACG00000013329
I
0.000
Elavl1
Rattus norvegicus
ENSRNOG00000001069
I
0.000
ELAVL1
Sus scrofa
ENSSSCG00000013592
I
0.000
ELAVL1
Oryzias latipes
ENSORLG00000000087
I
0.000
ELAVL1
Loxodonta africana
ENSLAFG00000004219
I
0.000
ELAVL1
Ochotona princeps
ENSOPRG00000009691
I
0.000
ELAVL1
Otolemur garnettii
ENSOGAG00000012877
I
0.000
ELAVL1
Macaca mulatta
ENSMMUG00000006544
I
0.000
ELAVL1
Meleagris gallopavo
ENSMGAG00000001015
I
0.000
Elavl1
Mus musculus
ENSMUSG00000040028
I
0.000
ELAVL1
Microcebus murinus
ENSMICG00000009699
I
0.000
ELAVL1
Monodelphis domestica
ENSMODG00000005041
I
0.000
ELAVL1
Myotis lucifugus
ENSMLUG00000008101
I
0.000
ELAVL1
Felis catus
ENSFCAG00000014947
I
0.000
ELAVL1
Spermophilus tridecemlineatus
ENSSTOG00000009130
I
0.000
ELAVL1
Tarsius syrichta
ENSTSYG00000008248
I
0.000
ELAVL1
Takifugu rubripes
ENSTRUG00000007296
I
0.000
ELAVL1
Takifugu rubripes
ENSTRUG00000004559
I
0.000
ELAVL1
Dasypus novemcinctus
ENSDNOG00000008797
I
0.000
ELAVL1
Tetraodon nigroviridis
ENSTNIG00000019823
I
0.000
Elavl1
Dipodomys ordii
ENSDORG00000009158
I
0.000
elavl1
Xenopus tropicalis
ENSXETG00000008752
I
0.000
ELAVL1
Taeniopygia guttata
ENSTGUG00000000118
I
0.000
ELAVL1
Homo sapiens
ENSG00000066044
D
0.000
elavl1
Danio rerio
ENSDARG00000038695
I
0.000
ELAVL1
Gasterosteus aculeatus
ENSGACG00000010657
I
0.000
ELAVL2
Tarsius syrichta
ENSTSYG00000013066
I
0.000
ELAVL2
Otolemur garnettii
ENSOGAG00000016228
I
0.000
ELAVL2
Tursiops truncatus
ENSTTRG00000011656
I
0.000
ELAVL2
Ornithorhynchus anatinus
ENSOANG00000009634
I
0.000
Elavl2
Mus musculus
ENSMUSG00000008489
I
0.000
ELAVL2
Vicugna pacos
ENSVPAG00000005109
I
0.000
ELAVL2
Oryctolagus cuniculus
ENSOCUG00000005891
I
0.000
ELAVL2
Ochotona princeps
ENSOPRG00000012874
I
0.000
elavl2
Xenopus tropicalis
ENSXETG00000009387
I
0.000
ELAVL2
Sus scrofa
ENSSSCG00000005130
I
0.000
ELAVL2
Sorex araneus
ENSSARG00000005702
I
0.000
Elavl2
Rattus norvegicus
ENSRNOG00000006853
I
0.000
ELAVL2
Taeniopygia guttata
ENSTGUG00000001349
I
0.000
ELAVL2
Tetraodon nigroviridis
ENSTNIG00000011312
I
0.000
ELAVL2
Pteropus vampyrus
ENSPVAG00000002688
I
0.000
ELAVL2
Pan troglodytes
ENSPTRG00000020830
I
0.000
ELAVL2
Procavia capensis
ENSPCAG00000014998
I
0.000
ELAVL2
Oryzias latipes
ENSORLG00000004217
I
0.000
ELAVL2
Takifugu rubripes
ENSTRUG00000007867
I
0.000
ELAVL2
Tupaia belangeri
ENSTBEG00000017759
I
0.000
ELAVL2
Spermophilus tridecemlineatus
ENSSTOG00000007792
I
0.000
ELAVL2
Myotis lucifugus
ENSMLUG00000014210
I
0.000
ELAVL2
Dasypus novemcinctus
ENSDNOG00000016605
I
0.000
ELAVL2
Equus caballus
ENSECAG00000020142
I
0.000
ELAVL2
Macropus eugenii
ENSMEUG00000006499
I
0.000
ELAVL2
Loxodonta africana
ENSLAFG00000009938
I
0.000
Elavl2
Dipodomys ordii
ENSDORG00000010437
I
0.000
ELAVL2
Erinaceus europaeus
ENSEEUG00000008733
I
0.000
ELAVL2
Gorilla gorilla
ENSGGOG00000003678
I
0.000
ELAVL2
Echinops telfairi
ENSETEG00000006134
I
0.000
ELAVL2
Gallus gallus
ENSGALG00000015799
I
0.000
ELAVL2
Homo sapiens
ENSG00000107105
D
0.000
elavl2
Danio rerio
ENSDARG00000040732
I
0.000
ELAVL2
Microcebus murinus
ENSMICG00000001558
I
0.000
ELAVL2
Anolis carolinensis
ENSACAG00000017521
I
0.000
ELAVL2
Canis familiaris
ENSCAFG00000001688
I
0.000
ELAVL2
Choloepus hoffmanni
ENSCHOG00000000635
I
0.000
ELAVL2
Callithrix jacchus
ENSCJAG00000008064
I
0.000
ELAVL2
Cavia porcellus
ENSCPOG00000010472
I
0.000
ELAVL2
Gasterosteus aculeatus
ENSGACG00000019484
I
0.000
ELAVL3
Gasterosteus aculeatus
ENSGACG00000013839
I
0.000
ELAVL3
Pteropus vampyrus
ENSPVAG00000014893
I
0.000
Elavl3
Rattus norvegicus
ENSRNOG00000013752
I
0.000
ELAVL3
Homo sapiens
ENSG00000196361
I
0.000
ELAVL3
Sorex araneus
ENSSARG00000005949
I
0.000
ELAVL3
Anolis carolinensis
ENSACAG00000016958
I
0.000
ELAVL3
Sus scrofa
ENSSSCG00000013617
I
0.000
ELAVL3
Oryzias latipes
ENSORLG00000005379
I
0.000
ELAVL3
Tupaia belangeri
ENSTBEG00000006133
I
0.000
elavl3
Xenopus tropicalis
ENSXETG00000016741
I
0.000
ELAVL3
Bos taurus
ENSBTAG00000014412
I
0.000
ELAVL3
Tursiops truncatus
ENSTTRG00000001789
I
0.000
ELAVL3
Canis familiaris
ENSCAFG00000017350
I
0.000
ELAVL3
Tetraodon nigroviridis
ENSTNIG00000018572
I
0.000
ELAVL3
Otolemur garnettii
ENSOGAG00000007072
I
0.000
ELAVL3
Takifugu rubripes
ENSTRUG00000010719
I
0.000
Elavl3
Dipodomys ordii
ENSDORG00000002538
I
0.000
elavl3
Danio rerio
ENSDARG00000014420
I
0.000
ELAVL3
Pan troglodytes
ENSPTRG00000010506
I
0.000
ELAVL3
Macropus eugenii
ENSMEUG00000016706
I
0.000
ELAVL3
Loxodonta africana
ENSLAFG00000005013
I
0.000
ELAVL3
Monodelphis domestica
ENSMODG00000006653
I
0.000
ELAVL3
Gorilla gorilla
ENSGGOG00000008635
I
0.000
Elavl3
Mus musculus
ENSMUSG00000003410
I
0.000
ELAVL4
Loxodonta africana
ENSLAFG00000001087
I
0.000
Elavl4
Dipodomys ordii
ENSDORG00000012729
I
0.000
ELAVL4
Gorilla gorilla
ENSGGOG00000000634
I
0.000
ELAVL4
Tarsius syrichta
ENSTSYG00000004130
I
0.000
ELAVL4
Otolemur garnettii
ENSOGAG00000016990
I
0.000
ELAVL4
Takifugu rubripes
ENSTRUG00000000523
I
0.000
ELAVL4
Oryctolagus cuniculus
ENSOCUG00000016262
I
0.000
ELAVL4
Macropus eugenii
ENSMEUG00000007145
I
0.000
ELAVL4
Choloepus hoffmanni
ENSCHOG00000002464
I
0.000
ELAVL4
Microcebus murinus
ENSMICG00000003286
I
0.000
ELAVL4
Callithrix jacchus
ENSCJAG00000013725
I
0.000
Elavl4
Mus musculus
ENSMUSG00000028546
I
0.000
ELAVL4
Meleagris gallopavo
ENSMGAG00000010928
I
0.000
elavl4
Danio rerio
ENSDARG00000045639
I
0.000
elavl4
Xenopus tropicalis
ENSXETG00000008680
I
0.000
ELAVL4
Vicugna pacos
ENSVPAG00000011606
I
0.000
ELAVL4
Dasypus novemcinctus
ENSDNOG00000002932
I
0.000
ELAVL4
Myotis lucifugus
ENSMLUG00000006226
I
0.000
ELAVL4
Ochotona princeps
ENSOPRG00000015300
I
0.000
ELAVL4
Tetraodon nigroviridis
ENSTNIG00000015485
I
0.000
ELAVL4
Anolis carolinensis
ENSACAG00000004527
I
0.000
ELAVL4
Gasterosteus aculeatus
ENSGACG00000011152
I
0.000
ELAVL4
Pan troglodytes
ENSPTRG00000000723
I
0.000
Elavl4
Rattus norvegicus
ENSRNOG00000023601
I
0.000
ELAVL4
Macaca mulatta
ENSMMUG00000021933
I
0.000
ELAVL4
Monodelphis domestica
ENSMODG00000001300
I
0.000
ELAVL4
Sorex araneus
ENSSARG00000010733
I
0.000
ELAVL4
Homo sapiens
ENSG00000162374
D
0.000
ELAVL4
Canis familiaris
ENSCAFG00000003927
I
0.000
ELAVL4
Pteropus vampyrus
ENSPVAG00000003632
I
0.000
ELAVL4
Taeniopygia guttata
ENSTGUG00000008597
I
0.000
ELAVL4
Erinaceus europaeus
ENSEEUG00000008766
I
0.000
ELAVL4
Tupaia belangeri
ENSTBEG00000011730
I
0.000
ELAVL4
Oryzias latipes
ENSORLG00000017130
I
0.000
ELAVL4
Echinops telfairi
ENSETEG00000013779
I
0.000
ELAVL4
Procavia capensis
ENSPCAG00000008215
I
0.000
ELAVL4
Spermophilus tridecemlineatus
ENSSTOG00000002834
I
0.000
ENSCAFG00000018353
Canis familiaris
ENSCAFG00000018353
I
0.000
ENSCPOG00000002044
Cavia porcellus
ENSCPOG00000002044
I
0.000
ENSCPOG00000022816
Cavia porcellus
ENSCPOG00000022816
I
0.000
ENSCSAVG00000003440
Ciona savignyi
ENSCSAVG00000003440
I
0.000
ENSMODG00000003850
Monodelphis domestica
ENSMODG00000003850
I
0.000
ENSPPYG00000001367
Pongo pygmaeus
ENSPPYG00000001367
I
0.000
ENSPPYG00000009496
Pongo pygmaeus
ENSPPYG00000009496
I
0.000
ENSPPYG00000019166
Pongo pygmaeus
ENSPPYG00000019166
I
0.000
estExt_Genewise1Plus.C_1660036
Capitella teleta
estExt_Genewise1Plus.C_1660036
I
0.000
fgenesh1_pg.C_scaffold_8000205
Daphnia pulex
fgenesh1_pg.C_scaffold_8000205
I
0.000
fgenesh2_pg.C_sca_14000012
Lottia gigantea
fgenesh2_pg.C_sca_14000012
I
0.000
fgenesh2_pg.scaffold_219000066
Branchiostoma floridae
fgenesh2_pg.scaffold_219000066
I
0.000
fne
Drosophila melanogaster
FBgn0086675
D
0.000
fne
Drosophila yakuba
FBgn0067971
I
0.000
GA22283-RA
Drosophila pseudoobscura
FBgn0243690
I
0.000
GA28809-RA
Drosophila pseudoobscura
FBgn0250168
I
0.000
GE18193
Drosophila yakuba
FBgn0235624
I
0.000
GF14992
Drosophila ananassae
FBgn0092017
I
0.000
GF21392
Drosophila ananassae
FBgn0098394
I
0.000
GG17743
Drosophila erecta
FBgn0109965
I
0.000
GG24901
Drosophila erecta
FBgn0117030
I
0.000
GH13638
Drosophila grimshawi
FBgn0121114
I
0.000
GH24423
Drosophila grimshawi
FBgn0131879
I
0.000
GI11879
Drosophila mojavensis
FBgn0134637
I
0.000
GI16282
Drosophila mojavensis
FBgn0139031
I
0.000
GJ13991
Drosophila virilis
FBgn0201209
I
0.000
GJ16518
Drosophila virilis
FBgn0203702
I
0.000
GK14865
Drosophila willistoni
FBgn0216870
I
0.000
GK25647
Drosophila willistoni
FBgn0227606
I
0.000
GL22975
Drosophila persimilis
FBgn0160565
I
0.000
GL26299
Drosophila persimilis
FBgn0163881
I
0.000
GM18380
Drosophila sechellia
FBgn0173287
I
0.000
hug
Danio rerio
ENSDARG00000016405
I
0.000
LOC100015949
Monodelphis domestica
ENSMODG00000003936
I
0.000
LOC100051268
Equus caballus
ENSECAG00000022284
I
0.000
LOC100056901
Equus caballus
ENSECAG00000020594
I
0.000
LOC100060819
Equus caballus
ENSECAG00000019459
I
0.000
LOC708195
Macaca mulatta
ENSMMUG00000010038
I
0.000
nasonia_NCBI_hmm330804
Nasonia vitripennis
nasonia_NCBI_hmm330804
I
0.000
PHUM065370
Pediculus humanus
PHUM065370
I
0.000
Q1JQ73
Xenopus laevis
Q1JQ73
I
0.000
Q3ZCE2_BOVIN
Bos taurus
ENSBTAG00000000613
I
0.000
Q5U259
Xenopus laevis
Q5U259
I
0.000
Q7SZT7
Xenopus laevis
Q7SZT7
I
0.000
Q91584
Xenopus laevis
Q91584
I
0.000
Q91903
Xenopus laevis
Q91903
I
0.000
Q9PW22_CHICK
Gallus gallus
ENSGALG00000010533
I
0.000
Q9PW24_CHICK
Gallus gallus
ENSGALG00000000726
I
0.000
Rbp9
Drosophila melanogaster
FBgn0010263
D
0.000