PABPC4 (Macaca mulatta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSMMUG00000007497 T38858_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.996
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.882
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.882
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.882
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.817
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSMMUP00000009844 RRM 13 83
ENSMMUP00000009844 RRM 101 169
ENSMMUP00000009844 RRM 193 262
ENSMMUP00000009844 RRM 296 364
ENSMMUP00000009846 RRM 13 83
ENSMMUP00000009846 RRM 101 169
ENSMMUP00000009846 RRM 193 262
ENSMMUP00000009846 RRM 296 364
ENSMMUP00000017351 RRM 13 83
ENSMMUP00000017351 RRM 101 169
ENSMMUP00000017351 RRM 193 262
ENSMMUP00000017351 RRM 296 364

Links

Other RRM family RBPs
Other Macaca mulatta RBPs

179 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AGAP003519 Anopheles gambiae AGAP003519 N 0.000
amel4_ncbi_hmm44335 Apis mellifera amel4_ncbi_hmm44335 N 0.000
BGIBMGA006328 Bombyx mori BGIBMGA006328 N 0.000
CPIJ002709 Culex quinquefasciatus CPIJ002709 N 0.000
CpipJ_CPIJ002709 Culex pipiens CpipJ_CPIJ002709 N 0.000
DGIL_AUG5s5041g4t3 Acyrtosiphon pisum DGIL_AUG5s5041g4t3 N 0.000
estExt_fgenesh1_pg.C_1350031 Capitella teleta estExt_fgenesh1_pg.C_1350031 N 0.000
GA27251-RA Drosophila pseudoobscura FBgn0248619 N 0.000
GE23462 Drosophila yakuba FBgn0240644 N 0.000
GF16118 Drosophila ananassae FBgn0093140 N 0.000
GG11270 Drosophila erecta FBgn0103571 N 0.000
GH18670 Drosophila grimshawi FBgn0126137 N 0.000
GJ10528 Drosophila virilis FBgn0197808 N 0.000
GK11389 Drosophila willistoni FBgn0213400 N 0.000
mask Drosophila melanogaster FBgn0043884 N 0.000
XP_001195797.1 Strongylocentrotus purpuratus XP_001195797.1 N 0.000