PABPC4 (Oryctolagus cuniculus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSOCUG00000000562 T39587_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.986
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.885
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.885
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.885
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.821
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSOCUP00000000485 RRM 13 83
ENSOCUP00000000485 RRM 101 169
ENSOCUP00000000485 RRM 193 262
ENSOCUP00000000485 RRM 296 364

Links

Other RRM family RBPs
Other Oryctolagus cuniculus RBPs

174 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAI06691 Xenopus laevis AAI06691 N 0.000
AAI24905 Xenopus laevis AAI24905 N 0.000
Ame_R008393 Ailuropoda melanoleuca Ame_R008393 N 0.000
ENSCING00000007913 Ciona intestinalis ENSCING00000007913 N 0.000
ENSCJAG00000033489 Callithrix jacchus ENSCJAG00000033489 N 0.000
ENSCSAVG00000010097 Ciona savignyi ENSCSAVG00000010097 N 0.000
ENSDARG00000078091 Danio rerio ENSDARG00000078091 N 0.000
ENSMGAG00000011708 Meleagris gallopavo ENSMGAG00000011708 N 0.000
ENSSSCG00000002336 Sus scrofa ENSSSCG00000002336 N 0.000
ENSSSCG00000002339 Sus scrofa ENSSSCG00000002339 N 0.000
fgenesh2_pg.scaffold_196000039 Branchiostoma floridae fgenesh2_pg.scaffold_196000039 N 0.000
fgeneshTA2_pg.C_scaffold_22000023 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_22000023 N 0.000
LOC100055577 Equus caballus ENSECAG00000013395 N 0.000
LOC100400201 Callithrix jacchus ENSCJAG00000014441 N 0.000
Q3ZCK6_BOVIN Bos taurus ENSBTAG00000017177 N 0.000
RBM25 Oryzias latipes ENSORLG00000011874 N 0.000
RBM25 Procavia capensis ENSPCAG00000006226 N 0.000
RBM25 Pan troglodytes ENSPTRG00000006509 N 0.000
RBM25 Sorex araneus ENSSARG00000002327 N 0.000
RBM25 Spermophilus tridecemlineatus ENSSTOG00000011117 N 0.000
RBM25 Taeniopygia guttata ENSTGUG00000011246 N 0.000
RBM25 Tetraodon nigroviridis ENSTNIG00000012222 N 0.000
RBM25 Takifugu rubripes ENSTRUG00000003076 N 0.000
RBM25 Takifugu rubripes ENSTRUG00000017964 N 0.000
RBM25 Vicugna pacos ENSVPAG00000009052 N 0.000
rbm25 Xenopus tropicalis ENSXETG00000021857 N 0.000
RBM25 Oryzias latipes ENSORLG00000009958 N 0.000
RBM25 Ochotona princeps ENSOPRG00000016744 N 0.000
RBM25 Oryctolagus cuniculus ENSOCUG00000013737 N 0.000
RBM25 Gasterosteus aculeatus ENSGACG00000012400 N 0.000
RBM25 Homo sapiens ENSG00000119707 N 0.000
RBM25 Echinops telfairi ENSETEG00000015941 N 0.000
RBM25 Erinaceus europaeus ENSEEUG00000007350 N 0.000
RBM25 Dasypus novemcinctus ENSDNOG00000004959 N 0.000
rbm25 Danio rerio ENSDARG00000006395 N 0.000
RBM25 Cavia porcellus ENSCPOG00000002479 N 0.000
RBM25 Canis familiaris ENSCAFG00000016809 N 0.000
RBM25 Gasterosteus aculeatus ENSGACG00000013536 N 0.000
RBM25 Gallus gallus ENSGALG00000009332 N 0.000
RBM25 Ornithorhynchus anatinus ENSOANG00000001056 N 0.000
Rbm25 Mus musculus ENSMUSG00000010608 N 0.000
RBM25 Monodelphis domestica ENSMODG00000006820 N 0.000
RBM25 Anolis carolinensis ENSACAG00000016239 N 0.000
RBM25 Macaca mulatta ENSMMUG00000002332 N 0.000
RBM25 Myotis lucifugus ENSMLUG00000015434 N 0.000
RBM25 Loxodonta africana ENSLAFG00000001074 N 0.000
RBM25 Gorilla gorilla ENSGGOG00000002415 N 0.000
RGD1565486 Rattus norvegicus ENSRNOG00000002871 N 0.000
XP_002157477.1 Hydra magnipapillata XP_002157477.1 N 0.000