CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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TNRC6B
(
Spermophilus tridecemlineatus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSSTOG00000008927
T41616_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSSTOP00000008022
RRM
1502
1566
LVLHNLTPQIDGSTLRTICMQHGPLLTFHLNLTQGTALIRYSTKQEAAKAQTALHMCVLGNTTIL
Links
Other
RRM
family RBPs
Other
Spermophilus tridecemlineatus
RBPs
115 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LOC_Os01g32470
Oryza sativa
LOC_Os01g32470
N
0.000
LOC_Os02g37790
Oryza sativa
LOC_Os02g37790
N
0.000
LOC_Os04g33410
Oryza sativa
LOC_Os04g33410
N
0.000
LOC_Os12g15720
Oryza sativa
LOC_Os12g15720
N
0.000
PTTG_01306
Puccinia triticina
PTTG_01306
N
0.000
PTTG_04497
Puccinia triticina
PTTG_04497
N
0.000
PTTG_06752
Puccinia triticina
PTTG_06752
N
0.000
PTTG_09070
Puccinia triticina
PTTG_09070
N
0.000