CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GG22991
(
Drosophila erecta
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
FBgn0115148
T43418_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0141537
RRM
18
88
VFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNLNGYEIGGRTLR
Links
Other
RRM
family RBPs
Other
Drosophila erecta
RBPs
126 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AB03792.1
Alternaria brassicicola
AB03792.1
N
0.000
AMAG_03225
Allomyces macrogynus
AMAG_03225
N
0.000
augustus-scaffold_1.g441
Schizophyllum commune
augustus-scaffold_1.g441
N
0.000
DEHA0A05764g
Debaryomyces hansenii
DEHA0A05764g
N
0.000
estExt_fgenesh2_kg.C_71062
Serpula lacrymans
estExt_fgenesh2_kg.C_71062
N
0.000
estExt_Genewise1Plus.C_200094
Postia placenta
estExt_Genewise1Plus.C_200094
N
0.000
e_gw1.1.503.1
Phycomyces blakesleeanus
e_gw1.1.503.1
N
0.000
e_gw1.87.91.1
Postia placenta
e_gw1.87.91.1
N
0.000
fgenesh1_pg.C_scaffold_4000265
Phanerochaete chrysosporium
fgenesh1_pg.C_scaffold_4000265
N
0.000
fgeneshTM_pg.1_#_1063
Tremella mesenterica
fgeneshTM_pg.1_#_1063
N
0.000
GSTUMT00006382001
Tuber melanosporum
GSTUMT00006382001
N
0.000
gwEuk.5.447.1
Ostreococcus lucimarinus
gwEuk.5.447.1
N
0.000
PTRG_04434
Pyrenophora tritici repentis
PTRG_04434
N
0.000
YALI0F14245g
Yarrowia lipolytica
YALI0F14245g
N
0.000