fgenesh1_pg.C_scaffold_4000265 (Phanerochaete chrysosporium)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgenesh1_pg.C_scaffold_4000265 T51882_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.C_scaffold_4000265 RRM 223 293

Links

Other RRM family RBPs
Other Phanerochaete chrysosporium RBPs

55 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
estExt_Genewise1Plus.C_200094 Postia placenta estExt_Genewise1Plus.C_200094 N 0.887
e_gw1.87.91.1 Postia placenta e_gw1.87.91.1 N 0.887
augustus-scaffold_1.g441 Schizophyllum commune augustus-scaffold_1.g441 N 0.845
CC1G_06273 Coprinopsis cinerea CC1G_06273 N 0.845
YALI0F14245g Yarrowia lipolytica YALI0F14245g N 0.831
genemark.9207_g Pleurotus ostreatus genemark.9207_g N 0.831
fgenesh1_pg.C_scaffold_1000567 Sporobolomyces roseus fgenesh1_pg.C_scaffold_1000567 N 0.817
eu2.Lbscf0011g04470 Laccaria bicolor eu2.Lbscf0011g04470 N 0.817
estExt_fgenesh2_kg.C_71062 Serpula lacrymans estExt_fgenesh2_kg.C_71062 N 0.817
GSTUMT00006382001 Tuber melanosporum GSTUMT00006382001 N 0.803
fgenesh1_pm.00609_#_590 Aspergillus carbonarius fgenesh1_pm.00609_#_590 N 0.803
AFUA_4G06350 Aspergillus fumigatus CADAFUAG00008260 N 0.789
ATEG_05588 Aspergillus terreus CADATEAG00005000 N 0.789
estExt_Genewise1Plus.C_30445 Agaricus bisporus estExt_Genewise1Plus.C_30445 N 0.789
AMAG_03225 Allomyces macrogynus AMAG_03225 N 0.789
gw1.11.934.1 Heterobasidion annosum gw1.11.934.1 N 0.789
An04g00680 Aspergillus niger CADANGAG00003776 N 0.789
AFLA_113610 Aspergillus flavus CADAFLAG00005095 N 0.775
PABG_04180 Paracoccidioides brasiliensis PABG_04180 N 0.775
PMAA_027560 Penicillium marneffei PMAA_027560 N 0.775
ACLA_045660 Aspergillus clavatus CADACLAG00004652 N 0.775
AO090023000955 Aspergillus oryzae CADAORAG00008034 N 0.775
e_gw1.10.335.1 Mucor circinelloides e_gw1.10.335.1 N 0.761
NFIA_109800 Neosartorya fischeri CADNFIAG00009499 N 0.761
ANIA_04346 Aspergillus nidulans CADANIAG00006114 N 0.761
SPPG_07834 Spizellomyces punctatus SPPG_07834 N 0.761
Pc22g17020 Penicillium chrysogenum Pc22g17020 N 0.746
ARB_01674 Arthroderma benhamiae ARB_01674 N 0.732
e_gw1.1.503.1 Phycomyces blakesleeanus e_gw1.1.503.1 N 0.732
e_gw1.35.197.1 Physcomitrella patens e_gw1.35.197.1 N 0.732
gw1.198.122.1 Physcomitrella patens gw1.198.122.1 N 0.732
fgeneshTM_pg.1_#_1063 Tremella mesenterica fgeneshTM_pg.1_#_1063 N 0.732
CIMG_04180 Coccidioides immitis CIMG_04180 N 0.732
CPSG_03082 Coccidioides posadasii CPSG_03082 N 0.732
TERG_07689 Trichophyton rubrum TERG_07689 N 0.732
TEQG_06916 Trichophyton equinum TEQG_06916 N 0.732
TESG_01475 Trichophyton tonsurans TESG_01475 N 0.732
TRV_00034 Trichophyton verrucosum TRV_00034 N 0.732
SS1G_03893 Sclerotinia sclerotiorum SS1G_03893 N 0.718
estExt_fgenesh1_pg.C_130152 Cochliobolus heterostrophus C5 estExt_fgenesh1_pg.C_130152 N 0.718
estExt_fgenesh2_pg.C_120136 Selaginella moellendorfii estExt_fgenesh2_pg.C_120136 N 0.718
RO3G_08088 Rhizopus oryzae RO3G_08088 N 0.718
PTRG_04434 Pyrenophora tritici repentis PTRG_04434 N 0.718
DEHA0A05764g Debaryomyces hansenii DEHA0A05764g N 0.718
estExt_fgenesh1_pg.C_90140 Trichoderma atroviride estExt_fgenesh1_pg.C_90140 N 0.704
fgenesh1_pg.C_scaffold_2000511 Cryphonectria parasitica fgenesh1_pg.C_scaffold_2000511 N 0.704
AB03792.1 Alternaria brassicicola AB03792.1 N 0.704
gw1.11.214.1 Batrachochytrium dendrobatidis gw1.11.214.1 N 0.704
SOCG_03680 Schizosaccharomyces octosporus SOCG_03680 N 0.704
VDAG_06981 Verticillium dahliae VDAG_06981 N 0.704
VDBG_05329 Verticillium albo atrum VDBG_05329 N 0.704
MGYG_01823 Microsporum gypseum MGYG_01823 N 0.704
MCYG_01275 Microsporum canis MCYG_01275 N 0.704
BDBG_06195 Blastomyces dermatitidis BDBG_06195 N 0.704
SPCC1827.05c Schizosaccharomyces pombe SPCC1827.05c N 0.704