GSVIVG00008646001 (Vitis vinifera)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 GSVIVG00008646001 T44626_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
GSVIVT00008646001 RRM 282 347
GSVIVT00008646001 RRM 367 432
GSVIVT00008646001 RRM 825 896

Links

Other RRM family RBPs
Other Vitis vinifera RBPs

73 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
28350.m000106 Ricinus communis 28350.m000106 N 0.902
29693.m002077 Ricinus communis 29693.m002077 N 0.873
30147.m014409 Ricinus communis 30147.m014409 N 0.887
B9GMT5_POPTR Populus trichocarpa POPTR_0001s13030 N 0.863
B9GT36_POPTR Populus trichocarpa POPTR_0002s06070 N 0.897
B9GZ23_POPTR Populus trichocarpa POPTR_0003s16110 N 0.843
B9H813_POPTR Populus trichocarpa POPTR_0005s22370 N 0.897
B9I403_POPTR Populus trichocarpa POPTR_0012s10900 N 0.843
BGIOSIBCE006715 Oryza indica BGIOSIBCE006715 N 0.784
BGIOSIBCE007174 Oryza indica BGIOSIBCE007174 N 0.824
BGIOSIBCE008451 Oryza indica BGIOSIBCE008451 N 0.859
BRADI1G52280 Brachypodium distachyon BRADI1G52280 N 0.873
BRADI3G10967 Brachypodium distachyon BRADI3G10967 N 0.794
BRADI3G44380 Brachypodium distachyon BRADI3G44380 N 0.853
BRADI5G08580 Brachypodium distachyon BRADI5G08580 N 0.745
cassava12910.valid.m1 Manihot esculenta cassava12910.valid.m1 N 0.858
cassava13647.valid.m1 Manihot esculenta cassava13647.valid.m1 N 0.804
cassava13648.valid.m1 Manihot esculenta cassava13648.valid.m1 N 0.804
cassava37261.valid.m1 Manihot esculenta cassava37261.valid.m1 N 0.779
cassava37262.valid.m1 Manihot esculenta cassava37262.valid.m1 N 0.779
cassava42352.valid.m1 Manihot esculenta cassava42352.valid.m1 N 0.902
cassava42353.valid.m1 Manihot esculenta cassava42353.valid.m1 N 0.902
cassava42354.valid.m1 Manihot esculenta cassava42354.valid.m1 N 0.902
cassava42355.valid.m1 Manihot esculenta cassava42355.valid.m1 N 0.902
cassava44897.m1 Manihot esculenta cassava44897.m1 N 0.902
cassava6429.valid.m1 Manihot esculenta cassava6429.valid.m1 N 0.907
chr6.CM0037.1500.nc Lotus japonicus chr6.CM0037.1500.nc N 0.882
Cucsa.047430 Cucumis sativus Cucsa.047430 N 0.868
Cucsa.185450 Cucumis sativus Cucsa.185450 N 0.902
Cucsa.349210 Cucumis sativus Cucsa.349210 N 0.887
estExt_fgenesh2_pg.C_120305 Selaginella moellendorfii estExt_fgenesh2_pg.C_120305 N 0.907
estExt_gwp_gw1.C_780034 Physcomitrella patens estExt_gwp_gw1.C_780034 N 0.912
e_gw1.12.24.1 Selaginella moellendorfii e_gw1.12.24.1 N 0.907
e_gw1.271.39.1 Physcomitrella patens e_gw1.271.39.1 N 0.912
e_gw1.78.82.1 Physcomitrella patens e_gw1.78.82.1 N 0.912
Glyma08g01040.1 Glycine max Glyma08g01040.1 N 0.804
Glyma08g42230.1 Glycine max Glyma08g42230.1 N 0.907
Glyma09g11630.1 Glycine max Glyma09g11630.1 N 0.882
Glyma15g23420.1 Glycine max Glyma15g23420.1 N 0.902
Glyma18g12730.1 Glycine max Glyma18g12730.1 N 0.912
GRMZM2G004455 Zea mays GRMZM2G004455 N 0.868
GRMZM2G012302 Zea mays GRMZM2G012302 N 0.810
GRMZM2G154229 Zea mays GRMZM2G154229 N 0.887
GRMZM2G451716 Zea mays GRMZM2G451716 N 0.745
GSVIVG00001086001 Vitis vinifera GSVIVG00001086001 N 0.907
GSVIVG00021379001 Vitis vinifera GSVIVG00021379001 N 0.922
LOC_Os02g21430 Oryza sativa LOC_Os02g21430 N 0.784
LOC_Os02g31290 Oryza sativa LOC_Os02g31290 N 0.824
LOC_Os02g48790 Oryza sativa LOC_Os02g48790 N 0.859
Medtr2g056620 Medicago truncatula Medtr2g056620 N 0.877
Medtr3g151260 Medicago truncatula Medtr3g151260 N 0.765
mgf000415m Mimulus guttatus mgf000415m N 0.882
mgf005765m Mimulus guttatus mgf005765m N 0.873
mgf014747m Mimulus guttatus mgf014747m N 0.888
mgf015667m Mimulus guttatus mgf015667m N 0.882
mgf023970m Mimulus guttatus mgf023970m N 0.817
ML1 Arabidopsis thaliana AT5G61960-TAIR-G N 0.706
ML2 Arabidopsis thaliana AT2G42890-TAIR-G N 0.735
ML5 Arabidopsis thaliana AT1G29400-TAIR-G N 0.848
PK15886.1 Cannabis sativa PK15886.1 N 0.877
PK19379.1 Cannabis sativa PK19379.1 N 0.789
PK24656.1 Cannabis sativa PK24656.1 N 0.882
PK25465.1 Cannabis sativa PK25465.1 N 0.912
ppa000845m Prunus persica ppa000845m N 0.887
ppa000997m Prunus persica ppa000997m N 0.838
ppa001307m Prunus persica ppa001307m N 0.887
ppa001327m Prunus persica ppa001327m N 0.917
SB04G021130 Sorghum bicolor Sb04g021130 N 0.829
SB06G014670 Sorghum bicolor Sb06g014670 N 0.730
SB10G000350 Sorghum bicolor Sb10g000350 N 0.877
XM_002866417.1 Arabidopsis lyrata scaffold_802845.1 N 0.701
XM_002870025.1 Arabidopsis lyrata fgenesh2_kg.7__2489__AT4G18120.1 N 0.745
XM_002893514.1 Arabidopsis lyrata Al_scaffold_0001_2998 N 0.848