cassava42352.valid.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava42352.valid.m1 T49392_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava42352.valid.m1 RRM 198 263
cassava42352.valid.m1 RRM 283 348
cassava42352.valid.m1 RRM 702 773

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

70 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
28350.m000106 Ricinus communis 28350.m000106 N 0.931
29693.m002077 Ricinus communis 29693.m002077 N 0.966
30147.m014409 Ricinus communis 30147.m014409 N 0.858
B9GMT5_POPTR Populus trichocarpa POPTR_0001s13030 N 0.839
B9GT36_POPTR Populus trichocarpa POPTR_0002s06070 N 0.926
B9GZ23_POPTR Populus trichocarpa POPTR_0003s16110 N 0.824
B9H813_POPTR Populus trichocarpa POPTR_0005s22370 N 0.926
B9I403_POPTR Populus trichocarpa POPTR_0012s10900 N 0.804
BGIOSIBCE006715 Oryza indica BGIOSIBCE006715 N 0.804
BGIOSIBCE007174 Oryza indica BGIOSIBCE007174 N 0.814
BGIOSIBCE008451 Oryza indica BGIOSIBCE008451 N 0.883
BRADI1G52280 Brachypodium distachyon BRADI1G52280 N 0.897
BRADI3G10967 Brachypodium distachyon BRADI3G10967 N 0.814
BRADI3G44380 Brachypodium distachyon BRADI3G44380 N 0.838
BRADI5G08580 Brachypodium distachyon BRADI5G08580 N 0.740
cassava12910.valid.m1 Manihot esculenta cassava12910.valid.m1 N 0.833
cassava13647.valid.m1 Manihot esculenta cassava13647.valid.m1 N 0.789
cassava13648.valid.m1 Manihot esculenta cassava13648.valid.m1 N 0.789
cassava37261.valid.m1 Manihot esculenta cassava37261.valid.m1 N 0.755
cassava37262.valid.m1 Manihot esculenta cassava37262.valid.m1 N 0.755
cassava42353.valid.m1 Manihot esculenta cassava42353.valid.m1 N 1.000
cassava42354.valid.m1 Manihot esculenta cassava42354.valid.m1 N 1.000
cassava42355.valid.m1 Manihot esculenta cassava42355.valid.m1 N 1.000
cassava44897.m1 Manihot esculenta cassava44897.m1 N 1.000
cassava6429.valid.m1 Manihot esculenta cassava6429.valid.m1 N 0.990
chr6.CM0037.1500.nc Lotus japonicus chr6.CM0037.1500.nc N 0.956
Cucsa.047430 Cucumis sativus Cucsa.047430 N 0.922
Cucsa.185450 Cucumis sativus Cucsa.185450 N 0.937
Cucsa.349210 Cucumis sativus Cucsa.349210 N 0.877
estExt_fgenesh2_pg.C_120305 Selaginella moellendorfii estExt_fgenesh2_pg.C_120305 N 0.877
estExt_gwp_gw1.C_780034 Physcomitrella patens estExt_gwp_gw1.C_780034 N 0.907
e_gw1.12.24.1 Selaginella moellendorfii e_gw1.12.24.1 N 0.882
e_gw1.271.39.1 Physcomitrella patens e_gw1.271.39.1 N 0.912
e_gw1.78.82.1 Physcomitrella patens e_gw1.78.82.1 N 0.907
Glyma08g01040.1 Glycine max Glyma08g01040.1 N 0.775
Glyma08g42230.1 Glycine max Glyma08g42230.1 N 0.961
Glyma09g11630.1 Glycine max Glyma09g11630.1 N 0.951
Glyma15g23420.1 Glycine max Glyma15g23420.1 N 0.971
Glyma18g12730.1 Glycine max Glyma18g12730.1 N 0.966
GRMZM2G004455 Zea mays GRMZM2G004455 N 0.902
GRMZM2G012302 Zea mays GRMZM2G012302 N 0.805
GRMZM2G154229 Zea mays GRMZM2G154229 N 0.897
GRMZM2G451716 Zea mays GRMZM2G451716 N 0.706
GSVIVG00001086001 Vitis vinifera GSVIVG00001086001 N 0.882
GSVIVG00008646001 Vitis vinifera GSVIVG00008646001 N 0.902
GSVIVG00021379001 Vitis vinifera GSVIVG00021379001 N 0.966
LOC_Os02g21430 Oryza sativa LOC_Os02g21430 N 0.804
LOC_Os02g31290 Oryza sativa LOC_Os02g31290 N 0.814
LOC_Os02g48790 Oryza sativa LOC_Os02g48790 N 0.883
Medtr2g056620 Medicago truncatula Medtr2g056620 N 0.971
Medtr3g151260 Medicago truncatula Medtr3g151260 N 0.735
mgf000415m Mimulus guttatus mgf000415m N 0.843
mgf005765m Mimulus guttatus mgf005765m N 0.922
mgf014747m Mimulus guttatus mgf014747m N 0.922
mgf015667m Mimulus guttatus mgf015667m N 0.843
mgf023970m Mimulus guttatus mgf023970m N 0.872
ML2 Arabidopsis thaliana AT2G42890-TAIR-G N 0.735
ML5 Arabidopsis thaliana AT1G29400-TAIR-G N 0.877
PK15886.1 Cannabis sativa PK15886.1 N 0.848
PK19379.1 Cannabis sativa PK19379.1 N 0.789
PK24656.1 Cannabis sativa PK24656.1 N 0.951
PK25465.1 Cannabis sativa PK25465.1 N 0.936
ppa000845m Prunus persica ppa000845m N 0.853
ppa000997m Prunus persica ppa000997m N 0.814
ppa001307m Prunus persica ppa001307m N 0.971
ppa001327m Prunus persica ppa001327m N 0.961
SB04G021130 Sorghum bicolor Sb04g021130 N 0.824
SB10G000350 Sorghum bicolor Sb10g000350 N 0.907
XM_002870025.1 Arabidopsis lyrata fgenesh2_kg.7__2489__AT4G18120.1 N 0.770
XM_002893514.1 Arabidopsis lyrata Al_scaffold_0001_2998 N 0.873