Cucsa.107130 (Cucumis sativus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Cucsa.107130 T49551_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.107130.1 RRM 8 77
Cucsa.107130.1 RRM 293 363
Cucsa.107130.1 RRM 489 553
Cucsa.107130.1 RRM 608 683
Cucsa.107130.1 RRM 708 776

Links

Other RRM family RBPs
Other Cucumis sativus RBPs

13 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
B9GY53_POPTR Populus trichocarpa POPTR_0003s14940 N 0.749
cassava28560.m1 Manihot esculenta cassava28560.m1 N 0.821
Glyma13g09970.1 Glycine max Glyma13g09970.1 N 0.790
GSVIVG00012163001 Vitis vinifera GSVIVG00012163001 N 0.749
LjT23J20.20.nc Lotus japonicus LjT23J20.20.nc N 0.763
LjT23J20.40.nc Lotus japonicus LjT23J20.40.nc N 0.718
LOC_Os04g52200 Oryza sativa LOC_Os04g52200 N 0.701
MDP0000289531 Malus x domestica MDP0000289531 N 0.752
mgf002385m Mimulus guttatus mgf002385m N 0.701
mgf006636m Mimulus guttatus mgf006636m N 0.766
mgf010702m Mimulus guttatus mgf010702m N 0.764
PK01923.1 Cannabis sativa PK01923.1 N 0.748
ppa001609m Prunus persica ppa001609m N 0.701