estExt_fgenesh2_pg.C_120305 (Selaginella moellendorfii)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_fgenesh2_pg.C_120305 T50784_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh2_pg.C_120305 RRM 190 255
estExt_fgenesh2_pg.C_120305 RRM 275 340
estExt_fgenesh2_pg.C_120305 RRM 659 729

Links

Other RRM family RBPs
Other Selaginella moellendorfii RBPs

71 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
28350.m000106 Ricinus communis 28350.m000106 N 0.873
29693.m002077 Ricinus communis 29693.m002077 N 0.848
30147.m014409 Ricinus communis 30147.m014409 N 0.853
B9GMT5_POPTR Populus trichocarpa POPTR_0001s13030 N 0.824
B9GT36_POPTR Populus trichocarpa POPTR_0002s06070 N 0.877
B9GZ23_POPTR Populus trichocarpa POPTR_0003s16110 N 0.809
B9H813_POPTR Populus trichocarpa POPTR_0005s22370 N 0.877
B9I403_POPTR Populus trichocarpa POPTR_0012s10900 N 0.809
BGIOSIBCE006715 Oryza indica BGIOSIBCE006715 N 0.773
BGIOSIBCE007174 Oryza indica BGIOSIBCE007174 N 0.809
BGIOSIBCE008451 Oryza indica BGIOSIBCE008451 N 0.839
BRADI1G52280 Brachypodium distachyon BRADI1G52280 N 0.848
BRADI3G10967 Brachypodium distachyon BRADI3G10967 N 0.770
BRADI3G44380 Brachypodium distachyon BRADI3G44380 N 0.843
BRADI5G08580 Brachypodium distachyon BRADI5G08580 N 0.768
cassava12910.valid.m1 Manihot esculenta cassava12910.valid.m1 N 0.824
cassava13647.valid.m1 Manihot esculenta cassava13647.valid.m1 N 0.794
cassava13648.valid.m1 Manihot esculenta cassava13648.valid.m1 N 0.794
cassava37261.valid.m1 Manihot esculenta cassava37261.valid.m1 N 0.755
cassava37262.valid.m1 Manihot esculenta cassava37262.valid.m1 N 0.755
cassava42352.valid.m1 Manihot esculenta cassava42352.valid.m1 N 0.877
cassava42353.valid.m1 Manihot esculenta cassava42353.valid.m1 N 0.877
cassava42354.valid.m1 Manihot esculenta cassava42354.valid.m1 N 0.877
cassava42355.valid.m1 Manihot esculenta cassava42355.valid.m1 N 0.877
cassava44897.m1 Manihot esculenta cassava44897.m1 N 0.877
cassava6429.valid.m1 Manihot esculenta cassava6429.valid.m1 N 0.882
chr6.CM0037.1500.nc Lotus japonicus chr6.CM0037.1500.nc N 0.872
Cucsa.047430 Cucumis sativus Cucsa.047430 N 0.853
Cucsa.185450 Cucumis sativus Cucsa.185450 N 0.898
Cucsa.349210 Cucumis sativus Cucsa.349210 N 0.853
estExt_gwp_gw1.C_780034 Physcomitrella patens estExt_gwp_gw1.C_780034 N 0.912
e_gw1.12.24.1 Selaginella moellendorfii e_gw1.12.24.1 N 0.941
e_gw1.271.39.1 Physcomitrella patens e_gw1.271.39.1 N 0.902
e_gw1.78.82.1 Physcomitrella patens e_gw1.78.82.1 N 0.912
Glyma08g01040.1 Glycine max Glyma08g01040.1 N 0.760
Glyma08g42230.1 Glycine max Glyma08g42230.1 N 0.882
Glyma09g11630.1 Glycine max Glyma09g11630.1 N 0.877
Glyma15g23420.1 Glycine max Glyma15g23420.1 N 0.892
Glyma18g12730.1 Glycine max Glyma18g12730.1 N 0.887
GRMZM2G004455 Zea mays GRMZM2G004455 N 0.838
GRMZM2G012302 Zea mays GRMZM2G012302 N 0.790
GRMZM2G154229 Zea mays GRMZM2G154229 N 0.848
GRMZM2G451716 Zea mays GRMZM2G451716 N 0.744
GSVIVG00001086001 Vitis vinifera GSVIVG00001086001 N 0.877
GSVIVG00008646001 Vitis vinifera GSVIVG00008646001 N 0.907
GSVIVG00021379001 Vitis vinifera GSVIVG00021379001 N 0.897
LOC_Os02g21430 Oryza sativa LOC_Os02g21430 N 0.773
LOC_Os02g31290 Oryza sativa LOC_Os02g31290 N 0.809
LOC_Os02g48790 Oryza sativa LOC_Os02g48790 N 0.839
Medtr2g056620 Medicago truncatula Medtr2g056620 N 0.872
Medtr3g151260 Medicago truncatula Medtr3g151260 N 0.730
mgf000415m Mimulus guttatus mgf000415m N 0.858
mgf005765m Mimulus guttatus mgf005765m N 0.849
mgf014747m Mimulus guttatus mgf014747m N 0.868
mgf015667m Mimulus guttatus mgf015667m N 0.858
mgf023970m Mimulus guttatus mgf023970m N 0.803
ML2 Arabidopsis thaliana AT2G42890-TAIR-G N 0.724
ML5 Arabidopsis thaliana AT1G29400-TAIR-G N 0.824
PK15886.1 Cannabis sativa PK15886.1 N 0.838
PK19379.1 Cannabis sativa PK19379.1 N 0.760
PK24656.1 Cannabis sativa PK24656.1 N 0.873
PK25465.1 Cannabis sativa PK25465.1 N 0.892
ppa000845m Prunus persica ppa000845m N 0.853
ppa000997m Prunus persica ppa000997m N 0.814
ppa001307m Prunus persica ppa001307m N 0.863
ppa001327m Prunus persica ppa001327m N 0.892
SB04G021130 Sorghum bicolor Sb04g021130 N 0.815
SB06G014670 Sorghum bicolor Sb06g014670 N 0.724
SB10G000350 Sorghum bicolor Sb10g000350 N 0.848
XM_002870025.1 Arabidopsis lyrata fgenesh2_kg.7__2489__AT4G18120.1 N 0.716
XM_002893514.1 Arabidopsis lyrata Al_scaffold_0001_2998 N 0.828