estExt_gwp_gw1.C_780034 (Physcomitrella patens)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_gwp_gw1.C_780034 T51621_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_gwp_gw1.C_780034 RRM 36 101
estExt_gwp_gw1.C_780034 RRM 121 186
estExt_gwp_gw1.C_780034 RRM 451 522

Links

Other RRM family RBPs
Other Physcomitrella patens RBPs

71 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29607.m000238 Ricinus communis 29607.m000238 I 0.000
AT2G40290 Arabidopsis thaliana AT2G40290-TAIR-G I 0.000
B9HHU6_POPTR Populus trichocarpa POPTR_0008s07250 I 0.000
B9HSK1_POPTR Populus trichocarpa POPTR_0010s19230 I 0.000
BGIOSIBCE010732 Oryza indica BGIOSIBCE010732 I 0.000
BRADI1G16700 Brachypodium distachyon BRADI1G16700 I 0.000
BRADI1G65210 Brachypodium distachyon BRADI1G65210 N 0.000
cassava16515.m1 Manihot esculenta cassava16515.m1 I 0.000
cassava7658.valid.m1 Manihot esculenta cassava7658.valid.m1 I 0.000
cassava7659.valid.m1 Manihot esculenta cassava7659.valid.m1 I 0.000
Cucsa.239320 Cucumis sativus Cucsa.239320 I 0.000
EIF2 Arabidopsis thaliana AT5G05470-TAIR-G I 0.000
estExt_fgenesh1_kg.C_70012 Micromonas pusilla estExt_fgenesh1_kg.C_70012 I 0.000
estExt_fgenesh1_pm.C_210071 Selaginella moellendorfii estExt_fgenesh1_pm.C_210071 I 0.000
estExt_fgenesh4_pg.C_220183 Volvox carteri estExt_fgenesh4_pg.C_220183 I 0.000
estExt_Genewise1.C_100332 Chlorella vulgaris estExt_Genewise1.C_100332 I 0.000
estExt_Genewise1.C_110295 Coccomyxa C 169 estExt_Genewise1.C_110295 I 0.000
estExt_gwp_gw1.C_3520018 Physcomitrella patens estExt_gwp_gw1.C_3520018 I 0.000
e_gwW.11.341.1 Chlamydomonas reinhardtii e_gwW.11.341.1 I 0.000
fgenesh1_pg.scaffold_55000187 Physcomitrella patens fgenesh1_pg.scaffold_55000187 I 0.000
Glyma11g35600.1 Glycine max Glyma11g35600.1 I 0.000
Glyma18g02820.1 Glycine max Glyma18g02820.1 I 0.000
GRMZM2G058138 Zea mays GRMZM2G058138 I 0.000
GRMZM2G083262 Zea mays GRMZM2G083262 I 0.000
GSVIVG00024676001 Vitis vinifera GSVIVG00024676001 I 0.000
IGS.gm_12_00191 Chlorella NC64A IGS.gm_12_00191 I 0.000
LjSGA_031492.1 Lotus japonicus LjSGA_031492.1 I 0.000
LOC_Os03g18510 Oryza sativa LOC_Os03g18510 I 0.000
MDP0000155133 Malus x domestica MDP0000155133 I 0.000
MDP0000663428 Malus x domestica MDP0000663428 I 0.000
MDP0000951954 Malus x domestica MDP0000951954 N 0.000
Medtr3g094720 Medicago truncatula Medtr3g094720 I 0.000
Medtr3g094730 Medicago truncatula Medtr3g094730 I 0.000
Medtr3g094740 Medicago truncatula Medtr3g094740 I 0.000
mgf006782m Mimulus guttatus mgf006782m I 0.000
PK10564.1 Cannabis sativa PK10564.1 I 0.000
ppa008120m Prunus persica ppa008120m I 0.000
SB01G038230 Sorghum bicolor Sb01g038230 I 0.000
XM_002873169.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_6000426 N 0.000
XM_002881666.1 Arabidopsis lyrata fgenesh2_kg.4__2141__AT2G40290.1 I 0.000