fgenesh1_pg.scaffold_55000187 (Physcomitrella patens)
S1

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00575 (S1) IPR003029 fgenesh1_pg.scaffold_55000187 T61219_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
eIF-2alpha
M231_0.6 		Drosophila melanogaster WGCAUG RNAcompete
Ray et al.(2013)
RNCMPT00273 		0.829
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.scaffold_55000187 S1 13 88

Links

Other S1 family RBPs
Other Physcomitrella patens RBPs

252 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
estExt_gwp_gw1.C_3520018 Physcomitrella patens estExt_gwp_gw1.C_3520018 I 0.947
estExt_fgenesh1_pm.C_210071 Selaginella moellendorfii estExt_fgenesh1_pm.C_210071 I 0.934
e_gwW.11.341.1 Chlamydomonas reinhardtii e_gwW.11.341.1 I 0.921
estExt_fgenesh4_pg.C_220183 Volvox carteri estExt_fgenesh4_pg.C_220183 I 0.921
estExt_Genewise1.C_100332 Chlorella vulgaris estExt_Genewise1.C_100332 I 0.908
estExt_Genewise1.C_110295 Coccomyxa C 169 estExt_Genewise1.C_110295 I 0.908
GSVIVG00024676001 Vitis vinifera GSVIVG00024676001 I 0.895
29607.m000238 Ricinus communis 29607.m000238 I 0.882
LjSGA_031492.1 Lotus japonicus LjSGA_031492.1 I 0.882
PK10564.1 Cannabis sativa PK10564.1 I 0.882
B9HSK1_POPTR Populus trichocarpa POPTR_0010s19230 I 0.882
B9HHU6_POPTR Populus trichocarpa POPTR_0008s07250 I 0.882
Cucsa.239320 Cucumis sativus Cucsa.239320 I 0.882
Medtr3g094740 Medicago truncatula Medtr3g094740 I 0.882
ppa008120m Prunus persica ppa008120m I 0.882
MDP0000663428 Malus x domestica MDP0000663428 I 0.882
AT2G40290 Arabidopsis thaliana AT2G40290-TAIR-G I 0.882
Glyma11g35600.1 Glycine max Glyma11g35600.1 I 0.882
Glyma18g02820.1 Glycine max Glyma18g02820.1 I 0.882
XM_002881666.1 Arabidopsis lyrata fgenesh2_kg.4__2141__AT2G40290.1 I 0.882
Medtr3g094730 Medicago truncatula Medtr3g094730 I 0.882
cassava16515.m1 Manihot esculenta cassava16515.m1 I 0.868
IGS.gm_12_00191 Chlorella NC64A IGS.gm_12_00191 I 0.868
Medtr3g094720 Medicago truncatula Medtr3g094720 I 0.868
cassava7658.valid.m1 Manihot esculenta cassava7658.valid.m1 I 0.868
cassava7659.valid.m1 Manihot esculenta cassava7659.valid.m1 I 0.868
estExt_GenewiseH_1.C_750056 Nematostella vectensis estExt_GenewiseH_1.C_750056 I 0.855
estExt_fgenesh1_kg.C_70012 Micromonas pusilla estExt_fgenesh1_kg.C_70012 I 0.855
mgf006782m Mimulus guttatus mgf006782m I 0.855
e_gw.114.57.1 Nematostella vectensis e_gw.114.57.1 I 0.855
MDP0000155133 Malus x domestica MDP0000155133 I 0.855
PASA_GEN_0500123 Daphnia pulex PASA_GEN_0500123 I 0.855
KLTH0B02002g Kluyveromyces thermotolerans KLTH0B02002g I 0.842
PHUM551010 Pediculus humanus PHUM551010 I 0.842
Kwal_15422 Kluyveromyces waltii Kwal_15422 I 0.842
fgenesh1_pm.C_scaffold_10000060 Batrachochytrium dendrobatidis fgenesh1_pm.C_scaffold_10000060 I 0.842
nasonia_NCBI_hmm338664 Nasonia vitripennis nasonia_NCBI_hmm338664 I 0.842
BGIBMGA004302 Bombyx mori BGIBMGA004302 I 0.842
amel4_ncbi_hmm23817 Apis mellifera amel4_ncbi_hmm23817 I 0.842
BRADI1G16700 Brachypodium distachyon BRADI1G16700 I 0.842
GJ19141 Drosophila virilis FBgn0206286 I 0.829
XP_002492289.1 Pichia pastoris XP_002492289.1 I 0.829
GL20268 Drosophila persimilis FBgn0157863 I 0.829
GM13399 Drosophila sechellia FBgn0168330 I 0.829
GD15749 Drosophila simulans FBgn0187410 I 0.829
GK25248 Drosophila willistoni FBgn0227207 I 0.829
CPIJ011194 Culex quinquefasciatus CPIJ011194 I 0.829
CpipJ_CPIJ011194 Culex pipiens CpipJ_CPIJ011194 I 0.829
LOC_Os03g18510 Oryza sativa LOC_Os03g18510 I 0.829
eIF-2alpha Drosophila melanogaster FBgn0261609 D 0.829
e_gww2.12.213.1 Phanerochaete chrysosporium e_gww2.12.213.1 I 0.829
GE15968 Drosophila yakuba FBgn0233524 I 0.829
e_gwEuk.2.353.1 Ostreococcus lucimarinus e_gwEuk.2.353.1 I 0.829
SB01G038230 Sorghum bicolor Sb01g038230 I 0.829
GA22144-RA Drosophila pseudoobscura FBgn0082124 I 0.829
GI21763 Drosophila mojavensis FBgn0144493 I 0.829
genemark.2222_g Pleurotus ostreatus genemark.2222_g I 0.829
BGIOSIBCE010732 Oryza indica BGIOSIBCE010732 I 0.829
SAKL0G14058g Lachancea kluyveri SAKL0G14058g I 0.829
EIF2 Arabidopsis thaliana AT5G05470-TAIR-G I 0.829
estExt_Genewise1.C_100122 Postia placenta estExt_Genewise1.C_100122 I 0.829
GF19374 Drosophila ananassae FBgn0096384 I 0.829
AGAP011190 Anopheles gambiae AGAP011190 I 0.829
estExt_fgenesh1_pg.C_Chr_02.00010078 Ostreococcus tauri estExt_fgenesh1_pg.C_Chr_02.00010078 I 0.829
AGR320W Ashbya gossypii AGR320W I 0.829
EIF2S1 Tursiops truncatus ENSTTRG00000015806 I 0.829
XM_002873169.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_6000426 N 0.829
SPPG_00622 Spizellomyces punctatus SPPG_00622 I 0.829
GG19321 Drosophila erecta FBgn0111525 I 0.829
GRMZM2G058138 Zea mays GRMZM2G058138 I 0.829
GRMZM2G083262 Zea mays GRMZM2G083262 I 0.829
EIF2S1 Anolis carolinensis ENSACAG00000005994 I 0.816
IF2A_BOVIN Bos taurus ENSBTAG00000016311 I 0.816
DGIL_AUG5s12507g4t1 Acyrtosiphon pisum DGIL_AUG5s12507g4t1 I 0.816
EIF2S1 Canis familiaris ENSCAFG00000016386 I 0.816
ANIA_03156 Aspergillus nidulans CADANIAG00009914 I 0.816
ACLA_041660 Aspergillus clavatus CADACLAG00004024 I 0.816
BRADI1G65210 Brachypodium distachyon BRADI1G65210 N 0.816
AFLA_020350 Aspergillus flavus CADAFLAG00003920 I 0.816
LOC100399114 Callithrix jacchus ENSCJAG00000015368 I 0.816
ATEG_04051 Aspergillus terreus CADATEAG00009463 I 0.816
NFIA_063860 Neosartorya fischeri CADNFIAG00005762 I 0.816
EIF2S1 Oryzias latipes ENSORLG00000011844 I 0.816
ENSPPYG00000005921 Pongo pygmaeus ENSPPYG00000005921 I 0.816
EIF2S1 Pan troglodytes ENSPTRG00000006462 I 0.816
EIF2S1 Procavia capensis ENSPCAG00000002613 I 0.816
EIF2S1 Ochotona princeps ENSOPRG00000004520 I 0.816
EIF2S1 Ornithorhynchus anatinus ENSOANG00000005409 I 0.816
IF2A_RABIT Oryctolagus cuniculus ENSOCUG00000012023 I 0.816
Eif2s1 Rattus norvegicus ENSRNOG00000009432 I 0.816
EIF2S1 Sorex araneus ENSSARG00000011682 I 0.816
EIF2S1 Takifugu rubripes ENSTRUG00000017958 I 0.816
ISCW017360 Ixodes scapularis ISCW017360 I 0.816
EIF2S1 Tetraodon nigroviridis ENSTNIG00000012223 I 0.816
EIF2S1 Taeniopygia guttata ENSTGUG00000011542 I 0.816
EIF2S1 Sus scrofa ENSSSCG00000002289 I 0.816
EIF2S1 Spermophilus tridecemlineatus ENSSTOG00000001565 I 0.816
Eif2s1 Mus musculus ENSMUSG00000021116 I 0.816
EIF2S1 Monodelphis domestica ENSMODG00000009911 I 0.816
EIF2S1 Erinaceus europaeus ENSEEUG00000010225 I 0.816
EIF2S1 Echinops telfairi ENSETEG00000019003 I 0.816
LOC100052709 Equus caballus ENSECAG00000018424 I 0.816
Eif2s1 Dipodomys ordii ENSDORG00000002382 I 0.816
eif2s1l Danio rerio ENSDARG00000005827 I 0.816
eif2s1 Danio rerio ENSDARG00000052178 I 0.816
EIF2S1 Homo sapiens ENSG00000134001 I 0.816
EIF2S1 Gasterosteus aculeatus ENSGACG00000008569 I 0.816
EIF2S1 Microcebus murinus ENSMICG00000010793 I 0.816
EIF2S1 Macaca mulatta ENSMMUG00000021419 I 0.816
EIF2S1 Meleagris gallopavo ENSMGAG00000011974 I 0.816
EIF2S1 Loxodonta africana ENSLAFG00000013423 I 0.816
IF2A_CHICK Gallus gallus ENSGALG00000009565 I 0.816
EIF2S1 Gorilla gorilla ENSGGOG00000001603 I 0.816
EIF2S1 Cavia porcellus ENSCPOG00000003313 I 0.816
PITG_07885 Phytophthora infestans PITG_07885 I 0.816
CPSG_04829 Coccidioides posadasii CPSG_04829 I 0.816
estExt_fgenesh2_kg.C_21286 Serpula lacrymans estExt_fgenesh2_kg.C_21286 I 0.816
estExt_fgenesh2_pm.C_120283 Heterobasidion annosum estExt_fgenesh2_pm.C_120283 I 0.816
estExt_fgenesh2_pm.C_sca_10068 Lottia gigantea estExt_fgenesh2_pm.C_sca_10068 I 0.816
e_gw1.3.2112.1 Cryphonectria parasitica e_gw1.3.2112.1 I 0.816
estExt_fgenesh1_pm.C_chr_100036 Mycosphaerella graminicola estExt_fgenesh1_pm.C_chr_100036 I 0.816
FVEG_06185 Fusarium verticillioides FVEG_06185 I 0.816
FOXG_08491 Fusarium oxysporum FOXG_08491 I 0.816
CIMG_00109 Coccidioides immitis CIMG_00109 I 0.816
fgenesh1_pm.00077_#_3 Aspergillus carbonarius fgenesh1_pm.00077_#_3 I 0.816
AAH46576 Xenopus laevis AAH46576 I 0.816
ZYRO0G12056g Zygosaccharomyces rouxii ZYRO0G12056g I 0.816
PMAA_021520 Penicillium marneffei PMAA_021520 I 0.816
Q7ZTK4 Xenopus laevis Q7ZTK4 I 0.816
estExt_fgenesh1_pg.C_20141 Mycosphaerella fijiensis estExt_fgenesh1_pg.C_20141 I 0.816
KLLA0A11814g Kluyveromyces lactis KLLA0A11814g I 0.816
BDBG_06604 Blastomyces dermatitidis BDBG_06604 I 0.816
BC1G_14334 Botrytis cinerea BC1G_14334 I 0.816
Ame_R013633 Ailuropoda melanoleuca Ame_R013633 I 0.816
GLRG_02833 Colletotrichum graminicola GLRG_02833 I 0.816
fgenesh_newKGs_kg.236__13__EST_ALL.fasta.Contig10263 Emiliania huxleyi fgenesh_newKGs_kg.236__13__EST_ALL.fasta.Contig10263 I 0.816
estExt_Genewise1Plus.C_sca_18_chr2_1_00859 Nectria haematococca estExt_Genewise1Plus.C_sca_18_chr2_1_00859 I 0.816
PredSwiss_EST393.1 Pneumocystis carinii PredSwiss_EST393.1 I 0.816
fgenesh1_pm.C_scaffold_69000005 Phytophthora ramorum fgenesh1_pm.C_scaffold_69000005 I 0.816
114622 Helobdella robusta 114622 I 0.816
VDBG_01622 Verticillium albo atrum VDBG_01622 I 0.816
VDAG_01930 Verticillium dahliae VDAG_01930 I 0.816
UREG_00217 Uncinocarpus reesii UREG_00217 I 0.816
72304 Aureococcus anophagefferens 72304 I 0.816
69770 Aureococcus anophagefferens 69770 I 0.816
estExt_Genewise1.C_100430 Trichoderma atroviride estExt_Genewise1.C_100430 I 0.816
A7TIH9_VANPO Vanderwaltozyma polyspora A7TIH9_VANPO I 0.816
estExt_Genewise1.C_21511 Trichoderma virens estExt_Genewise1.C_21511 I 0.816
estExt_Genewise1.C_10111 Trichoderma reesei estExt_Genewise1.C_10111 I 0.816
estExt_Genewise1.C_30452 Schizophyllum commune estExt_Genewise1.C_30452 I 0.803
CAGL0B03795g Candida glabrata CAGL0B03795g I 0.803
AB05699.1 Alternaria brassicicola AB05699.1 I 0.803
estExt_fgenesh3_kg.C_30291 Neurospora discreta estExt_fgenesh3_kg.C_30291 I 0.803
estExt_fgenesh2_kg.C_20112 Fragilariopsis cylindrus estExt_fgenesh2_kg.C_20112 I 0.803
NCU08277 Neurospora crassa NCU08277 I 0.803
Pa_6_5980 Podospora anserina Pa_6_5980 I 0.803
PHATRDRAFT_34538 Phaeodactylum tricornutum Phatr34538 I 0.803
EAT79164.1 Phaeosphaeria nodorum EAT79164.1 I 0.803
estExt_Genewise1Plus.C_10999 Thielavia terrestris estExt_Genewise1Plus.C_10999 I 0.803
estExt_fgenesh2_kg.C_40048 Neurospora tetrasperma estExt_fgenesh2_kg.C_40048 I 0.803
GSTUMT00002346001 Tuber melanosporum GSTUMT00002346001 I 0.803
estExt_fgenesh1_kg.C_130002 Sporobolomyces roseus estExt_fgenesh1_kg.C_130002 I 0.803
MGYG_00686 Microsporum gypseum MGYG_00686 I 0.803
e_gw1.7.228.1 Trichoplax adhaerens e_gw1.7.228.1 I 0.803
e_gwh1.12.106.1 Laccaria bicolor e_gwh1.12.106.1 I 0.803
MCYG_00123 Microsporum canis MCYG_00123 I 0.803
HCAG_01136 Histoplasma capsulatum HCAG_01136 I 0.803
LELG_00811 Lodderomyces elongisporus LELG_00811 I 0.803
PTRG_05239 Pyrenophora tritici repentis PTRG_05239 I 0.803
SNOG_13280 Stagonospora nodorum SNOG_13280 I 0.803
TRV_03711 Trichophyton verrucosum TRV_03711 I 0.803
AAEL013675 Aedes aegypti AAEL013675 I 0.803
TESG_05324 Trichophyton tonsurans TESG_05324 I 0.803
TERG_00559 Trichophyton rubrum TERG_00559 I 0.803
TEQG_01370 Trichophyton equinum TEQG_01370 I 0.803
XP_002156465.1 Hydra magnipapillata XP_002156465.1 I 0.803
FGSG_06220 Fusarium graminearum FGSG_06220 I 0.803
ENSCHOG00000009030 Choloepus hoffmanni ENSCHOG00000009030 I 0.803
CC1G_08524 Coprinopsis cinerea CC1G_08524 I 0.803
estExt_fgenesh1_kg.C_10157 Myceliophthora thermophila estExt_fgenesh1_kg.C_10157 I 0.803
YALI0B01034g Yarrowia lipolytica YALI0B01034g I 0.803
ARB_05709 Arthroderma benhamiae ARB_05709 I 0.803
CHGG_04762 Chaetomium globosum CHGG_04762 I 0.803
CTRG_04191 Candida tropicalis CTRG_04191 I 0.803
DEHA0F26235g Debaryomyces hansenii DEHA0F26235g I 0.803
estExt_fgenesh1_pg.C_210136 Cochliobolus heterostrophus C5 estExt_fgenesh1_pg.C_210136 I 0.803
CPAG_01889 Candida parapsilosis CPAG_01889 I 0.803
CLUG_04130 Candida lusitaniae CLUG_04130 I 0.803
AFUA_3G13480 Aspergillus fumigatus CADAFUAG00005171 I 0.795
SUI2 Saccharomyces cerevisiae YJR007W I 0.789
LOC_Os07g49220 Oryza sativa LOC_Os07g49220 I 0.789
estExt_fgenesh2_pm.C_5760005 Branchiostoma floridae estExt_fgenesh2_pm.C_5760005 I 0.789
estExt_Genewise1Plus.C_2350006 Capitella teleta estExt_Genewise1Plus.C_2350006 I 0.789
estExt_fgenesh2_pm.C_1660010 Branchiostoma floridae estExt_fgenesh2_pm.C_1660010 I 0.789
BGIOSIBCE026135 Oryza indica BGIOSIBCE026135 I 0.789
XP_001176396.1 Strongylocentrotus purpuratus XP_001176396.1 I 0.789
XP_001176254.1 Strongylocentrotus purpuratus XP_001176254.1 I 0.789
estExt_Genewise1Plus.C_80350 Agaricus bisporus estExt_Genewise1Plus.C_80350 I 0.789
XP_779939.1 Strongylocentrotus purpuratus XP_779939.1 I 0.789
XP_801812.1 Strongylocentrotus purpuratus XP_801812.1 I 0.789
MGG_13200 Magnaporthe oryzae MGG_13200 I 0.789
AMSG_04936 Thecamonas trahens AMSG_04936 I 0.789
SUI2 Candida albicans orf19.6213 I 0.789
Cd36_06510 Candida dubliniensis Cd36_06510 I 0.789
Scas_Contig617.9 Saccharomyces castellii Scas_Contig617.9 I 0.789
Scas_Contig479.2 Saccharomyces castellii Scas_Contig479.2 I 0.789
ENSCHOG00000004230 Choloepus hoffmanni ENSCHOG00000004230 I 0.789
ENSCHOG00000003744 Choloepus hoffmanni ENSCHOG00000003744 I 0.789
12331_YJR007W Saccharomyces paradoxus 12331_YJR007W I 0.789
12209_YJR007W Saccharomyces mikatae 12209_YJR007W I 0.789
13294_YJR007W Saccharomyces bayanus 13294_YJR007W I 0.789
SS1G_13048 Sclerotinia sclerotiorum SS1G_13048 I 0.785
CAOG_02542 Capsaspora owczarzaki CAOG_02542 I 0.782
EIF2S1 Tarsius syrichta ENSTSYG00000014171 I 0.776
AMAG_01618 Allomyces macrogynus AMAG_01618 I 0.776
UM01463 Ustilago maydis UM01463 I 0.776
EIF2S1 Pteropus vampyrus ENSPVAG00000003040 I 0.776
estExt_fgenesh2_pg.C_150109 Monosiga brevicollis estExt_fgenesh2_pg.C_150109 I 0.776
THAPSDRAFT_105 Thalassiosira pseudonana Thaps105 I 0.776
Skud_Contig1955.10 Saccharomyces kudriavzevii Skud_Contig1955.10 I 0.776
WUBG_12485 Wuchereria bancrofti WUBG_12485 I 0.776
Bm1_04900 Brugia malayi Bm1_04900 I 0.776
AMAG_04113 Allomyces macrogynus AMAG_04113 I 0.776
PGUG_00485 Candida guilliermondii PGUG_00485 I 0.776
fgenesh1_pg.C_scaffold_2000543 Melampsora laricis populina fgenesh1_pg.C_scaffold_2000543 I 0.776
LOAG_09556 Loa loa LOAG_09556 I 0.776
estExt_fgenesh1_pg.C_210283 Phytophthora capsici estExt_fgenesh1_pg.C_210283 I 0.763
EDP42051.1 Malassezia globosa EDP42051.1 I 0.763
RO3G_13185 Rhizopus oryzae RO3G_13185 I 0.763
RO3G_12494 Rhizopus oryzae RO3G_12494 I 0.763
estExt_Genewise1.C_51162 Mucor circinelloides estExt_Genewise1.C_51162 I 0.763
e_gw1.2.367.1 Ostreococcus RCC809 e_gw1.2.367.1 I 0.763
estExt_Genewise1Plus.C_230113 Phycomyces blakesleeanus estExt_Genewise1Plus.C_230113 I 0.763
SOCG_01617 Schizosaccharomyces octosporus SOCG_01617 I 0.750
AO090012000783 Aspergillus oryzae CADAORAG00006316 N 0.750
SJAG_03629 Schizosaccharomyces japonicus SJAG_03629 I 0.750
tif211 Schizosaccharomyces pombe SPAC3G9.09c I 0.750
MDP0000674982 Malus x domestica MDP0000674982 N 0.750
SPOG_03916 Schizosaccharomyces cryophilus SPOG_03916 I 0.750
fgeneshHS_pg.scaffold_37000098 Naegleria gruberi fgeneshHS_pg.scaffold_37000098 N 0.737
EFA85538.1 Polysphondylium pallidum EFA85538.1 I 0.737
MDP0000951954 Malus x domestica MDP0000951954 N 0.737
e_gw1.18.114.1 Tremella mesenterica e_gw1.18.114.1 I 0.737
PTSG_05806 Salpingoeca rosetta PTSG_05806 I 0.737
eif2s1 Xenopus tropicalis ENSXETG00000011221 I 0.724
GID1.0050760 Dictyostelium purpureum GID1.0050760 I 0.711
PGTG_13830 Puccinia graminis PGTG_13830 N 0.711
TGME49_113230 Toxoplasma gondii TGME49_113230 I 0.711
NCLIV_056550 Neospora caninum NCLIV_056550 I 0.711
TGGT1_089620 Toxoplasma gondii TGGT1_089620 I 0.711
PPA05168 Pristionchus pacificus PPA05168 I 0.711
TGVEG_097260 Toxoplasma gondii TGVEG_097260 I 0.711