XM_002873169.1 (Arabidopsis lyrata)
S1

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00575 (S1) IPR003029 fgenesh1_pg.C_scaffold_6000426 T60673_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.C_scaffold_6000426 S1 18 92

Links

Other S1 family RBPs
Other Arabidopsis lyrata RBPs

190 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
EIF2 Arabidopsis thaliana AT5G05470-TAIR-G I 0.960
MDP0000155133 Malus x domestica MDP0000155133 I 0.947
AT2G40290 Arabidopsis thaliana AT2G40290-TAIR-G I 0.921
PK10564.1 Cannabis sativa PK10564.1 I 0.921
Cucsa.239320 Cucumis sativus Cucsa.239320 I 0.921
Medtr3g094740 Medicago truncatula Medtr3g094740 I 0.921
Medtr3g094730 Medicago truncatula Medtr3g094730 I 0.921
29607.m000238 Ricinus communis 29607.m000238 I 0.921
Glyma11g35600.1 Glycine max Glyma11g35600.1 I 0.921
Glyma18g02820.1 Glycine max Glyma18g02820.1 I 0.921
MDP0000663428 Malus x domestica MDP0000663428 I 0.921
LjSGA_031492.1 Lotus japonicus LjSGA_031492.1 I 0.921
XM_002881666.1 Arabidopsis lyrata fgenesh2_kg.4__2141__AT2G40290.1 I 0.921
B9HSK1_POPTR Populus trichocarpa POPTR_0010s19230 I 0.921
ppa008120m Prunus persica ppa008120m I 0.921
B9HHU6_POPTR Populus trichocarpa POPTR_0008s07250 I 0.921
cassava7658.valid.m1 Manihot esculenta cassava7658.valid.m1 I 0.908
cassava7659.valid.m1 Manihot esculenta cassava7659.valid.m1 I 0.908
GSVIVG00024676001 Vitis vinifera GSVIVG00024676001 I 0.908
cassava16515.m1 Manihot esculenta cassava16515.m1 I 0.893
BRADI1G16700 Brachypodium distachyon BRADI1G16700 I 0.893
mgf006782m Mimulus guttatus mgf006782m I 0.882
Medtr3g094720 Medicago truncatula Medtr3g094720 I 0.882
GRMZM2G058138 Zea mays GRMZM2G058138 I 0.880
GRMZM2G083262 Zea mays GRMZM2G083262 I 0.880
BGIOSIBCE010732 Oryza indica BGIOSIBCE010732 I 0.880
LOC_Os03g18510 Oryza sativa LOC_Os03g18510 I 0.880
SB01G038230 Sorghum bicolor Sb01g038230 I 0.880
BRADI1G65210 Brachypodium distachyon BRADI1G65210 N 0.867
estExt_gwp_gw1.C_3520018 Physcomitrella patens estExt_gwp_gw1.C_3520018 I 0.842
estExt_fgenesh1_pm.C_210071 Selaginella moellendorfii estExt_fgenesh1_pm.C_210071 I 0.840
fgenesh1_pg.scaffold_55000187 Physcomitrella patens fgenesh1_pg.scaffold_55000187 I 0.829
estExt_Genewise1.C_100332 Chlorella vulgaris estExt_Genewise1.C_100332 I 0.829
estExt_Genewise1.C_110295 Coccomyxa C 169 estExt_Genewise1.C_110295 I 0.829
MDP0000951954 Malus x domestica MDP0000951954 N 0.827
estExt_fgenesh4_pg.C_220183 Volvox carteri estExt_fgenesh4_pg.C_220183 I 0.816
e_gwW.11.341.1 Chlamydomonas reinhardtii e_gwW.11.341.1 I 0.816
estExt_fgenesh1_pg.C_Chr_02.00010078 Ostreococcus tauri estExt_fgenesh1_pg.C_Chr_02.00010078 I 0.800
MDP0000674982 Malus x domestica MDP0000674982 N 0.789
LOC_Os07g49220 Oryza sativa LOC_Os07g49220 I 0.787
BGIOSIBCE026135 Oryza indica BGIOSIBCE026135 I 0.787
IGS.gm_12_00191 Chlorella NC64A IGS.gm_12_00191 I 0.787
estExt_fgenesh1_kg.C_70012 Micromonas pusilla estExt_fgenesh1_kg.C_70012 I 0.787
e_gwEuk.2.353.1 Ostreococcus lucimarinus e_gwEuk.2.353.1 I 0.773
estExt_fgenesh2_kg.C_21286 Serpula lacrymans estExt_fgenesh2_kg.C_21286 I 0.750
PITG_07885 Phytophthora infestans PITG_07885 I 0.747
SPPG_00622 Spizellomyces punctatus SPPG_00622 I 0.747
fgenesh1_pm.C_scaffold_69000005 Phytophthora ramorum fgenesh1_pm.C_scaffold_69000005 I 0.747
estExt_Genewise1Plus.C_230113 Phycomyces blakesleeanus estExt_Genewise1Plus.C_230113 I 0.747
PredSwiss_EST393.1 Pneumocystis carinii PredSwiss_EST393.1 I 0.737
fgenesh1_pm.C_scaffold_10000060 Batrachochytrium dendrobatidis fgenesh1_pm.C_scaffold_10000060 I 0.737
e_gw1.3.2112.1 Cryphonectria parasitica e_gw1.3.2112.1 I 0.737
YALI0B01034g Yarrowia lipolytica YALI0B01034g I 0.737
UM01463 Ustilago maydis UM01463 I 0.737
genemark.2222_g Pleurotus ostreatus genemark.2222_g I 0.737
e_gww2.12.213.1 Phanerochaete chrysosporium e_gww2.12.213.1 I 0.737
estExt_Genewise1.C_100122 Postia placenta estExt_Genewise1.C_100122 I 0.737
estExt_fgenesh2_kg.C_20112 Fragilariopsis cylindrus estExt_fgenesh2_kg.C_20112 I 0.737
RO3G_13185 Rhizopus oryzae RO3G_13185 I 0.733
EIF2S1 Tursiops truncatus ENSTTRG00000015806 I 0.733
69770 Aureococcus anophagefferens 69770 I 0.733
RO3G_12494 Rhizopus oryzae RO3G_12494 I 0.733
estExt_fgenesh1_kg.C_130002 Sporobolomyces roseus estExt_fgenesh1_kg.C_130002 I 0.733
estExt_Genewise1.C_51162 Mucor circinelloides estExt_Genewise1.C_51162 I 0.733
estExt_fgenesh2_pm.C_1660010 Branchiostoma floridae estExt_fgenesh2_pm.C_1660010 I 0.733
72304 Aureococcus anophagefferens 72304 I 0.733
fgenesh1_pg.C_scaffold_2000543 Melampsora laricis populina fgenesh1_pg.C_scaffold_2000543 I 0.733
estExt_fgenesh2_pm.C_5760005 Branchiostoma floridae estExt_fgenesh2_pm.C_5760005 I 0.733
CHGG_04762 Chaetomium globosum CHGG_04762 I 0.724
estExt_fgenesh2_pm.C_120283 Heterobasidion annosum estExt_fgenesh2_pm.C_120283 I 0.724
EDP42051.1 Malassezia globosa EDP42051.1 I 0.724
FGSG_06220 Fusarium graminearum FGSG_06220 I 0.724
MGG_13200 Magnaporthe oryzae MGG_13200 I 0.724
Pa_6_5980 Podospora anserina Pa_6_5980 I 0.724
estExt_fgenesh1_kg.C_10157 Myceliophthora thermophila estExt_fgenesh1_kg.C_10157 I 0.724
e_gw.114.57.1 Nematostella vectensis e_gw.114.57.1 I 0.724
estExt_fgenesh3_kg.C_30291 Neurospora discreta estExt_fgenesh3_kg.C_30291 I 0.724
estExt_fgenesh2_kg.C_40048 Neurospora tetrasperma estExt_fgenesh2_kg.C_40048 I 0.724
estExt_GenewiseH_1.C_750056 Nematostella vectensis estExt_GenewiseH_1.C_750056 I 0.724
estExt_Genewise1Plus.C_10999 Thielavia terrestris estExt_Genewise1Plus.C_10999 I 0.724
NCU08277 Neurospora crassa NCU08277 I 0.724
PHATRDRAFT_34538 Phaeodactylum tricornutum Phatr34538 I 0.724
PASA_GEN_0500123 Daphnia pulex PASA_GEN_0500123 I 0.724
Eif2s1 Dipodomys ordii ENSDORG00000002382 I 0.720
MGYG_00686 Microsporum gypseum MGYG_00686 I 0.720
EIF2S1 Gasterosteus aculeatus ENSGACG00000008569 I 0.720
MCYG_00123 Microsporum canis MCYG_00123 I 0.720
e_gw1.2.367.1 Ostreococcus RCC809 e_gw1.2.367.1 I 0.720
LOAG_09556 Loa loa LOAG_09556 I 0.720
EIF2S1 Erinaceus europaeus ENSEEUG00000010225 I 0.720
EIF2S1 Echinops telfairi ENSETEG00000019003 I 0.720
114622 Helobdella robusta 114622 I 0.720
LOC100052709 Equus caballus ENSECAG00000018424 I 0.720
HCAG_01136 Histoplasma capsulatum HCAG_01136 I 0.720
EIF2S1 Homo sapiens ENSG00000134001 I 0.720
TERG_00559 Trichophyton rubrum TERG_00559 I 0.720
WUBG_12485 Wuchereria bancrofti WUBG_12485 I 0.720
LOC100399114 Callithrix jacchus ENSCJAG00000015368 I 0.720
EIF2S1 Canis familiaris ENSCAFG00000016386 I 0.720
IF2A_BOVIN Bos taurus ENSBTAG00000016311 I 0.720
CBG22041 Caenorhabditis briggsae CBG22041 I 0.720
EIF2S1 Anolis carolinensis ENSACAG00000005994 I 0.720
EIF2S1 Cavia porcellus ENSCPOG00000003313 I 0.720
Ame_R013633 Ailuropoda melanoleuca Ame_R013633 I 0.720
IF2A_CHICK Gallus gallus ENSGALG00000009565 I 0.720
TEQG_01370 Trichophyton equinum TEQG_01370 I 0.720
TESG_05324 Trichophyton tonsurans TESG_05324 I 0.720
TRV_03711 Trichophyton verrucosum TRV_03711 I 0.720
eif2s1l Danio rerio ENSDARG00000005827 I 0.720
eif2s1 Danio rerio ENSDARG00000052178 I 0.720
EIF2S1 Loxodonta africana ENSLAFG00000013423 I 0.720
ENSPPYG00000005921 Pongo pygmaeus ENSPPYG00000005921 I 0.720
EIF2S1 Pan troglodytes ENSPTRG00000006462 I 0.720
EIF2S1 Procavia capensis ENSPCAG00000002613 I 0.720
EIF2S1 Oryzias latipes ENSORLG00000011844 I 0.720
EIF2S1 Gorilla gorilla ENSGGOG00000001603 I 0.720
EIF2S1 Ochotona princeps ENSOPRG00000004520 I 0.720
Eif2s1 Rattus norvegicus ENSRNOG00000009432 I 0.720
EIF2S1 Sorex araneus ENSSARG00000011682 I 0.720
EIF2S1 Tetraodon nigroviridis ENSTNIG00000012223 I 0.720
EIF2S1 Takifugu rubripes ENSTRUG00000017958 I 0.720
EIF2S1 Taeniopygia guttata ENSTGUG00000011542 I 0.720
EIF2S1 Spermophilus tridecemlineatus ENSSTOG00000001565 I 0.720
EIF2S1 Sus scrofa ENSSSCG00000002289 I 0.720
EIF2S1 Ornithorhynchus anatinus ENSOANG00000005409 I 0.720
IF2A_RABIT Oryctolagus cuniculus ENSOCUG00000012023 I 0.720
ARB_05709 Arthroderma benhamiae ARB_05709 I 0.720
Eif2s1 Mus musculus ENSMUSG00000021116 I 0.720
EIF2S1 Microcebus murinus ENSMICG00000010793 I 0.720
EIF2S1 Meleagris gallopavo ENSMGAG00000011974 I 0.720
Bm1_04900 Brugia malayi Bm1_04900 I 0.720
AMAG_04113 Allomyces macrogynus AMAG_04113 I 0.720
AMSG_04936 Thecamonas trahens AMSG_04936 I 0.720
XP_002156465.1 Hydra magnipapillata XP_002156465.1 I 0.720
AMAG_01618 Allomyces macrogynus AMAG_01618 I 0.720
EIF2S1 Macaca mulatta ENSMMUG00000021419 I 0.720
EIF2S1 Monodelphis domestica ENSMODG00000009911 I 0.720
AAH46576 Xenopus laevis AAH46576 I 0.720
Q7ZTK4 Xenopus laevis Q7ZTK4 I 0.720
AFLA_020350 Aspergillus flavus CADAFLAG00003920 I 0.711
ISCW017360 Ixodes scapularis ISCW017360 I 0.711
ATEG_04051 Aspergillus terreus CADATEAG00009463 I 0.711
NFIA_063860 Neosartorya fischeri CADNFIAG00005762 I 0.711
ANIA_03156 Aspergillus nidulans CADANIAG00009914 I 0.711
UREG_00217 Uncinocarpus reesii UREG_00217 I 0.711
estExt_fgenesh1_pm.C_chr_100036 Mycosphaerella graminicola estExt_fgenesh1_pm.C_chr_100036 I 0.711
PMAA_021520 Penicillium marneffei PMAA_021520 I 0.711
estExt_Genewise1.C_100430 Trichoderma atroviride estExt_Genewise1.C_100430 I 0.711
BC1G_14334 Botrytis cinerea BC1G_14334 I 0.711
BDBG_06604 Blastomyces dermatitidis BDBG_06604 I 0.711
CIMG_00109 Coccidioides immitis CIMG_00109 I 0.711
ACLA_041660 Aspergillus clavatus CADACLAG00004024 I 0.711
CC1G_08524 Coprinopsis cinerea CC1G_08524 I 0.711
estExt_Genewise1.C_10111 Trichoderma reesei estExt_Genewise1.C_10111 I 0.711
estExt_Genewise1.C_21511 Trichoderma virens estExt_Genewise1.C_21511 I 0.711
estExt_Genewise1Plus.C_sca_18_chr2_1_00859 Nectria haematococca estExt_Genewise1Plus.C_sca_18_chr2_1_00859 I 0.711
BGIBMGA004302 Bombyx mori BGIBMGA004302 I 0.711
e_gw1.18.114.1 Tremella mesenterica e_gw1.18.114.1 I 0.711
fgenesh1_pm.00077_#_3 Aspergillus carbonarius fgenesh1_pm.00077_#_3 I 0.711
GSTUMT00002346001 Tuber melanosporum GSTUMT00002346001 I 0.711
estExt_Genewise1.C_30452 Schizophyllum commune estExt_Genewise1.C_30452 I 0.711
Kwal_15422 Kluyveromyces waltii Kwal_15422 I 0.711
KLTH0B02002g Kluyveromyces thermotolerans KLTH0B02002g I 0.711
CPSG_04829 Coccidioides posadasii CPSG_04829 I 0.711
estExt_fgenesh1_pg.C_20141 Mycosphaerella fijiensis estExt_fgenesh1_pg.C_20141 I 0.711
FOXG_08491 Fusarium oxysporum FOXG_08491 I 0.711
VDBG_01622 Verticillium albo atrum VDBG_01622 I 0.711
nasonia_NCBI_hmm338664 Nasonia vitripennis nasonia_NCBI_hmm338664 I 0.711
THAPSDRAFT_105 Thalassiosira pseudonana Thaps105 I 0.711
PHUM551010 Pediculus humanus PHUM551010 I 0.711
VDAG_01930 Verticillium dahliae VDAG_01930 I 0.711
amel4_ncbi_hmm23817 Apis mellifera amel4_ncbi_hmm23817 I 0.711
e_gwh1.12.106.1 Laccaria bicolor e_gwh1.12.106.1 I 0.711
GLRG_02833 Colletotrichum graminicola GLRG_02833 I 0.711
FVEG_06185 Fusarium verticillioides FVEG_06185 I 0.711
estExt_Genewise1Plus.C_2350006 Capitella teleta estExt_Genewise1Plus.C_2350006 I 0.707
NCLIV_056550 Neospora caninum NCLIV_056550 I 0.707
fgenesh_newKGs_kg.236__13__EST_ALL.fasta.Contig10263 Emiliania huxleyi fgenesh_newKGs_kg.236__13__EST_ALL.fasta.Contig10263 I 0.707
estExt_fgenesh1_pg.C_210283 Phytophthora capsici estExt_fgenesh1_pg.C_210283 I 0.707
CBN03344 Caenorhabditis brenneri CBN03344 I 0.707
Y37E3.10 Caenorhabditis elegans Y37E3.10 I 0.707
CBN09310 Caenorhabditis brenneri CBN09310 I 0.707
ENSCHOG00000009030 Choloepus hoffmanni ENSCHOG00000009030 I 0.707
estExt_fgenesh2_pm.C_sca_10068 Lottia gigantea estExt_fgenesh2_pm.C_sca_10068 I 0.707
TGGT1_089620 Toxoplasma gondii TGGT1_089620 I 0.707
KLLA0A11814g Kluyveromyces lactis KLLA0A11814g I 0.707
TGME49_113230 Toxoplasma gondii TGME49_113230 I 0.707
CRE03750 Caenorhabditis remanei CRE03750 I 0.707
TGVEG_097260 Toxoplasma gondii TGVEG_097260 I 0.707
CAOG_02542 Capsaspora owczarzaki CAOG_02542 I 0.701