MDP0000951954 (Malus x domestica)
S1

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00575 (S1) IPR003029 MDP0000951954 T61625_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000951954 S1 18 92

Links

Other S1 family RBPs
Other Malus x domestica RBPs

41 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MDP0000155133 Malus x domestica MDP0000155133 I 0.880
MDP0000663428 Malus x domestica MDP0000663428 I 0.855
LjSGA_031492.1 Lotus japonicus LjSGA_031492.1 I 0.855
29607.m000238 Ricinus communis 29607.m000238 I 0.855
B9HSK1_POPTR Populus trichocarpa POPTR_0010s19230 I 0.855
ppa008120m Prunus persica ppa008120m I 0.855
B9HHU6_POPTR Populus trichocarpa POPTR_0008s07250 I 0.855
Medtr3g094730 Medicago truncatula Medtr3g094730 I 0.855
Glyma18g02820.1 Glycine max Glyma18g02820.1 I 0.855
Glyma11g35600.1 Glycine max Glyma11g35600.1 I 0.855
Medtr3g094740 Medicago truncatula Medtr3g094740 I 0.855
Cucsa.239320 Cucumis sativus Cucsa.239320 I 0.855
AT2G40290 Arabidopsis thaliana AT2G40290-TAIR-G I 0.855
XM_002881666.1 Arabidopsis lyrata fgenesh2_kg.4__2141__AT2G40290.1 I 0.855
PK10564.1 Cannabis sativa PK10564.1 I 0.855
cassava7659.valid.m1 Manihot esculenta cassava7659.valid.m1 I 0.842
GSVIVG00024676001 Vitis vinifera GSVIVG00024676001 I 0.842
cassava7658.valid.m1 Manihot esculenta cassava7658.valid.m1 I 0.842
cassava16515.m1 Manihot esculenta cassava16515.m1 I 0.840
XM_002873169.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_6000426 N 0.827
Medtr3g094720 Medicago truncatula Medtr3g094720 I 0.816
EIF2 Arabidopsis thaliana AT5G05470-TAIR-G I 0.813
mgf006782m Mimulus guttatus mgf006782m I 0.789
BRADI1G16700 Brachypodium distachyon BRADI1G16700 I 0.773
SB01G038230 Sorghum bicolor Sb01g038230 I 0.760
GRMZM2G058138 Zea mays GRMZM2G058138 I 0.760
BGIOSIBCE010732 Oryza indica BGIOSIBCE010732 I 0.760
GRMZM2G083262 Zea mays GRMZM2G083262 I 0.760
LOC_Os03g18510 Oryza sativa LOC_Os03g18510 I 0.760
estExt_gwp_gw1.C_3520018 Physcomitrella patens estExt_gwp_gw1.C_3520018 I 0.750
estExt_fgenesh1_pm.C_210071 Selaginella moellendorfii estExt_fgenesh1_pm.C_210071 I 0.747
BRADI1G65210 Brachypodium distachyon BRADI1G65210 N 0.747
fgenesh1_pg.scaffold_55000187 Physcomitrella patens fgenesh1_pg.scaffold_55000187 I 0.737
MDP0000674982 Malus x domestica MDP0000674982 N 0.737
estExt_Genewise1.C_100332 Chlorella vulgaris estExt_Genewise1.C_100332 I 0.724
estExt_Genewise1.C_110295 Coccomyxa C 169 estExt_Genewise1.C_110295 I 0.724
estExt_fgenesh1_pg.C_Chr_02.00010078 Ostreococcus tauri estExt_fgenesh1_pg.C_Chr_02.00010078 I 0.720
e_gwW.11.341.1 Chlamydomonas reinhardtii e_gwW.11.341.1 I 0.711
estExt_fgenesh4_pg.C_220183 Volvox carteri estExt_fgenesh4_pg.C_220183 I 0.711
estExt_fgenesh1_kg.C_70012 Micromonas pusilla estExt_fgenesh1_kg.C_70012 I 0.707
IGS.gm_12_00191 Chlorella NC64A IGS.gm_12_00191 I 0.707