estExt_gwp_gw1.C_3520018 (Physcomitrella patens)
S1

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00575 (S1) IPR003029 estExt_gwp_gw1.C_3520018 T61190_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
eIF-2alpha
M231_0.6 		Drosophila melanogaster WGCAUG RNAcompete
Ray et al.(2013)
RNCMPT00273 		0.816
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_gwp_gw1.C_3520018 S1 13 88

Links

Other S1 family RBPs
Other Physcomitrella patens RBPs

249 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
fgenesh1_pg.scaffold_55000187 Physcomitrella patens fgenesh1_pg.scaffold_55000187 I 0.947
estExt_fgenesh1_pm.C_210071 Selaginella moellendorfii estExt_fgenesh1_pm.C_210071 I 0.934
e_gwW.11.341.1 Chlamydomonas reinhardtii e_gwW.11.341.1 I 0.921
estExt_fgenesh4_pg.C_220183 Volvox carteri estExt_fgenesh4_pg.C_220183 I 0.921
GSVIVG00024676001 Vitis vinifera GSVIVG00024676001 I 0.908
estExt_Genewise1.C_110295 Coccomyxa C 169 estExt_Genewise1.C_110295 I 0.908
estExt_Genewise1.C_100332 Chlorella vulgaris estExt_Genewise1.C_100332 I 0.908
ppa008120m Prunus persica ppa008120m I 0.895
PK10564.1 Cannabis sativa PK10564.1 I 0.895
MDP0000663428 Malus x domestica MDP0000663428 I 0.895
LjSGA_031492.1 Lotus japonicus LjSGA_031492.1 I 0.895
B9HHU6_POPTR Populus trichocarpa POPTR_0008s07250 I 0.895
Cucsa.239320 Cucumis sativus Cucsa.239320 I 0.895
29607.m000238 Ricinus communis 29607.m000238 I 0.895
B9HSK1_POPTR Populus trichocarpa POPTR_0010s19230 I 0.895
Medtr3g094740 Medicago truncatula Medtr3g094740 I 0.895
XM_002881666.1 Arabidopsis lyrata fgenesh2_kg.4__2141__AT2G40290.1 I 0.895
AT2G40290 Arabidopsis thaliana AT2G40290-TAIR-G I 0.895
Glyma11g35600.1 Glycine max Glyma11g35600.1 I 0.895
Glyma18g02820.1 Glycine max Glyma18g02820.1 I 0.895
Medtr3g094730 Medicago truncatula Medtr3g094730 I 0.895
cassava16515.m1 Manihot esculenta cassava16515.m1 I 0.882
cassava7658.valid.m1 Manihot esculenta cassava7658.valid.m1 I 0.882
cassava7659.valid.m1 Manihot esculenta cassava7659.valid.m1 I 0.882
Medtr3g094720 Medicago truncatula Medtr3g094720 I 0.882
IGS.gm_12_00191 Chlorella NC64A IGS.gm_12_00191 I 0.868
mgf006782m Mimulus guttatus mgf006782m I 0.868
MDP0000155133 Malus x domestica MDP0000155133 I 0.868
BRADI1G16700 Brachypodium distachyon BRADI1G16700 I 0.855
estExt_fgenesh1_kg.C_70012 Micromonas pusilla estExt_fgenesh1_kg.C_70012 I 0.842
e_gw.114.57.1 Nematostella vectensis e_gw.114.57.1 I 0.842
SB01G038230 Sorghum bicolor Sb01g038230 I 0.842
XM_002873169.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_6000426 N 0.842
LOC_Os03g18510 Oryza sativa LOC_Os03g18510 I 0.842
PASA_GEN_0500123 Daphnia pulex PASA_GEN_0500123 I 0.842
GRMZM2G058138 Zea mays GRMZM2G058138 I 0.842
GRMZM2G083262 Zea mays GRMZM2G083262 I 0.842
BGIOSIBCE010732 Oryza indica BGIOSIBCE010732 I 0.842
EIF2 Arabidopsis thaliana AT5G05470-TAIR-G I 0.842
estExt_GenewiseH_1.C_750056 Nematostella vectensis estExt_GenewiseH_1.C_750056 I 0.842
BRADI1G65210 Brachypodium distachyon BRADI1G65210 N 0.829
PHUM551010 Pediculus humanus PHUM551010 I 0.829
EIF2S1 Tursiops truncatus ENSTTRG00000015806 I 0.829
BGIBMGA004302 Bombyx mori BGIBMGA004302 I 0.829
nasonia_NCBI_hmm338664 Nasonia vitripennis nasonia_NCBI_hmm338664 I 0.829
amel4_ncbi_hmm23817 Apis mellifera amel4_ncbi_hmm23817 I 0.829
EIF2S1 Pan troglodytes ENSPTRG00000006462 I 0.816
EIF2S1 Procavia capensis ENSPCAG00000002613 I 0.816
EIF2S1 Oryzias latipes ENSORLG00000011844 I 0.816
CPIJ011194 Culex quinquefasciatus CPIJ011194 I 0.816
ENSPPYG00000005921 Pongo pygmaeus ENSPPYG00000005921 I 0.816
EIF2S1 Anolis carolinensis ENSACAG00000005994 I 0.816
EIF2S1 Tetraodon nigroviridis ENSTNIG00000012223 I 0.816
EIF2S1 Takifugu rubripes ENSTRUG00000017958 I 0.816
GA22144-RA Drosophila pseudoobscura FBgn0082124 I 0.816
GF19374 Drosophila ananassae FBgn0096384 I 0.816
EIF2S1 Taeniopygia guttata ENSTGUG00000011542 I 0.816
EIF2S1 Spermophilus tridecemlineatus ENSSTOG00000001565 I 0.816
EIF2S1 Canis familiaris ENSCAFG00000016386 I 0.816
LOC100399114 Callithrix jacchus ENSCJAG00000015368 I 0.816
EIF2S1 Sorex araneus ENSSARG00000011682 I 0.816
EIF2S1 Sus scrofa ENSSSCG00000002289 I 0.816
Eif2s1 Rattus norvegicus ENSRNOG00000009432 I 0.816
EIF2S1 Ornithorhynchus anatinus ENSOANG00000005409 I 0.816
EIF2S1 Gasterosteus aculeatus ENSGACG00000008569 I 0.816
IF2A_CHICK Gallus gallus ENSGALG00000009565 I 0.816
EIF2S1 Gorilla gorilla ENSGGOG00000001603 I 0.816
EIF2S1 Loxodonta africana ENSLAFG00000013423 I 0.816
EIF2S1 Homo sapiens ENSG00000134001 I 0.816
EIF2S1 Echinops telfairi ENSETEG00000019003 I 0.816
LOC100052709 Equus caballus ENSECAG00000018424 I 0.816
EIF2S1 Erinaceus europaeus ENSEEUG00000010225 I 0.816
Eif2s1 Dipodomys ordii ENSDORG00000002382 I 0.816
EIF2S1 Meleagris gallopavo ENSMGAG00000011974 I 0.816
EIF2S1 Microcebus murinus ENSMICG00000010793 I 0.816
eif2s1l Danio rerio ENSDARG00000005827 I 0.816
Eif2s1 Mus musculus ENSMUSG00000021116 I 0.816
IF2A_RABIT Oryctolagus cuniculus ENSOCUG00000012023 I 0.816
EIF2S1 Ochotona princeps ENSOPRG00000004520 I 0.816
EIF2S1 Monodelphis domestica ENSMODG00000009911 I 0.816
EIF2S1 Macaca mulatta ENSMMUG00000021419 I 0.816
AGAP011190 Anopheles gambiae AGAP011190 I 0.816
GG19321 Drosophila erecta FBgn0111525 I 0.816
eif2s1 Danio rerio ENSDARG00000052178 I 0.816
EIF2S1 Cavia porcellus ENSCPOG00000003313 I 0.816
GK25248 Drosophila willistoni FBgn0227207 I 0.816
estExt_Genewise1.C_100122 Postia placenta estExt_Genewise1.C_100122 I 0.816
AAH46576 Xenopus laevis AAH46576 I 0.816
e_gww2.12.213.1 Phanerochaete chrysosporium e_gww2.12.213.1 I 0.816
fgenesh1_pm.C_scaffold_10000060 Batrachochytrium dendrobatidis fgenesh1_pm.C_scaffold_10000060 I 0.816
estExt_fgenesh1_pg.C_Chr_02.00010078 Ostreococcus tauri estExt_fgenesh1_pg.C_Chr_02.00010078 I 0.816
Kwal_15422 Kluyveromyces waltii Kwal_15422 I 0.816
genemark.2222_g Pleurotus ostreatus genemark.2222_g I 0.816
GI21763 Drosophila mojavensis FBgn0144493 I 0.816
e_gwEuk.2.353.1 Ostreococcus lucimarinus e_gwEuk.2.353.1 I 0.816
KLTH0B02002g Kluyveromyces thermotolerans KLTH0B02002g I 0.816
Ame_R013633 Ailuropoda melanoleuca Ame_R013633 I 0.816
Q7ZTK4 Xenopus laevis Q7ZTK4 I 0.816
GD15749 Drosophila simulans FBgn0187410 I 0.816
CpipJ_CPIJ011194 Culex pipiens CpipJ_CPIJ011194 I 0.816
GM13399 Drosophila sechellia FBgn0168330 I 0.816
GL20268 Drosophila persimilis FBgn0157863 I 0.816
GJ19141 Drosophila virilis FBgn0206286 I 0.816
IF2A_BOVIN Bos taurus ENSBTAG00000016311 I 0.816
GE15968 Drosophila yakuba FBgn0233524 I 0.816
eIF-2alpha Drosophila melanogaster FBgn0261609 D 0.816
fgenesh1_pm.C_scaffold_69000005 Phytophthora ramorum fgenesh1_pm.C_scaffold_69000005 I 0.803
AGR320W Ashbya gossypii AGR320W I 0.803
DGIL_AUG5s12507g4t1 Acyrtosiphon pisum DGIL_AUG5s12507g4t1 I 0.803
estExt_fgenesh1_kg.C_130002 Sporobolomyces roseus estExt_fgenesh1_kg.C_130002 I 0.803
BGIOSIBCE026135 Oryza indica BGIOSIBCE026135 I 0.803
estExt_fgenesh2_kg.C_21286 Serpula lacrymans estExt_fgenesh2_kg.C_21286 I 0.803
estExt_fgenesh2_pm.C_120283 Heterobasidion annosum estExt_fgenesh2_pm.C_120283 I 0.803
ENSCHOG00000009030 Choloepus hoffmanni ENSCHOG00000009030 I 0.803
SPPG_00622 Spizellomyces punctatus SPPG_00622 I 0.803
PITG_07885 Phytophthora infestans PITG_07885 I 0.803
LOC_Os07g49220 Oryza sativa LOC_Os07g49220 I 0.803
ISCW017360 Ixodes scapularis ISCW017360 I 0.803
114622 Helobdella robusta 114622 I 0.803
XP_002492289.1 Pichia pastoris XP_002492289.1 I 0.803
ENSCHOG00000003744 Choloepus hoffmanni ENSCHOG00000003744 I 0.803
estExt_fgenesh2_pm.C_sca_10068 Lottia gigantea estExt_fgenesh2_pm.C_sca_10068 I 0.803
SAKL0G14058g Lachancea kluyveri SAKL0G14058g I 0.803
estExt_Genewise1Plus.C_sca_18_chr2_1_00859 Nectria haematococca estExt_Genewise1Plus.C_sca_18_chr2_1_00859 I 0.789
estExt_Genewise1.C_21511 Trichoderma virens estExt_Genewise1.C_21511 I 0.789
ENSCHOG00000004230 Choloepus hoffmanni ENSCHOG00000004230 I 0.789
estExt_Genewise1.C_10111 Trichoderma reesei estExt_Genewise1.C_10111 I 0.789
estExt_Genewise1.C_100430 Trichoderma atroviride estExt_Genewise1.C_100430 I 0.789
estExt_Genewise1.C_30452 Schizophyllum commune estExt_Genewise1.C_30452 I 0.789
e_gwh1.12.106.1 Laccaria bicolor e_gwh1.12.106.1 I 0.789
fgenesh_newKGs_kg.236__13__EST_ALL.fasta.Contig10263 Emiliania huxleyi fgenesh_newKGs_kg.236__13__EST_ALL.fasta.Contig10263 I 0.789
72304 Aureococcus anophagefferens 72304 I 0.789
69770 Aureococcus anophagefferens 69770 I 0.789
PHATRDRAFT_34538 Phaeodactylum tricornutum Phatr34538 I 0.789
e_gw1.7.228.1 Trichoplax adhaerens e_gw1.7.228.1 I 0.789
estExt_fgenesh1_pg.C_20141 Mycosphaerella fijiensis estExt_fgenesh1_pg.C_20141 I 0.789
estExt_fgenesh2_pm.C_1660010 Branchiostoma floridae estExt_fgenesh2_pm.C_1660010 I 0.789
estExt_fgenesh2_kg.C_20112 Fragilariopsis cylindrus estExt_fgenesh2_kg.C_20112 I 0.789
estExt_fgenesh1_pm.C_chr_100036 Mycosphaerella graminicola estExt_fgenesh1_pm.C_chr_100036 I 0.789
estExt_fgenesh2_pm.C_5760005 Branchiostoma floridae estExt_fgenesh2_pm.C_5760005 I 0.789
ANIA_03156 Aspergillus nidulans CADANIAG00009914 I 0.789
CC1G_08524 Coprinopsis cinerea CC1G_08524 I 0.789
BC1G_14334 Botrytis cinerea BC1G_14334 I 0.789
CIMG_00109 Coccidioides immitis CIMG_00109 I 0.789
CPSG_04829 Coccidioides posadasii CPSG_04829 I 0.789
FVEG_06185 Fusarium verticillioides FVEG_06185 I 0.789
FOXG_08491 Fusarium oxysporum FOXG_08491 I 0.789
ZYRO0G12056g Zygosaccharomyces rouxii ZYRO0G12056g I 0.789
XP_002156465.1 Hydra magnipapillata XP_002156465.1 I 0.789
A7TIH9_VANPO Vanderwaltozyma polyspora A7TIH9_VANPO I 0.789
PredSwiss_EST393.1 Pneumocystis carinii PredSwiss_EST393.1 I 0.789
e_gw1.3.2112.1 Cryphonectria parasitica e_gw1.3.2112.1 I 0.789
fgenesh1_pm.00077_#_3 Aspergillus carbonarius fgenesh1_pm.00077_#_3 I 0.789
PMAA_021520 Penicillium marneffei PMAA_021520 I 0.789
KLLA0A11814g Kluyveromyces lactis KLLA0A11814g I 0.789
GLRG_02833 Colletotrichum graminicola GLRG_02833 I 0.789
BDBG_06604 Blastomyces dermatitidis BDBG_06604 I 0.789
VDAG_01930 Verticillium dahliae VDAG_01930 I 0.789
AFLA_020350 Aspergillus flavus CADAFLAG00003920 I 0.789
AAEL013675 Aedes aegypti AAEL013675 I 0.789
ACLA_041660 Aspergillus clavatus CADACLAG00004024 I 0.789
VDBG_01622 Verticillium albo atrum VDBG_01622 I 0.789
NFIA_063860 Neosartorya fischeri CADNFIAG00005762 I 0.789
UREG_00217 Uncinocarpus reesii UREG_00217 I 0.789
ATEG_04051 Aspergillus terreus CADATEAG00009463 I 0.789
fgenesh1_pg.C_scaffold_2000543 Melampsora laricis populina fgenesh1_pg.C_scaffold_2000543 I 0.776
XP_779939.1 Strongylocentrotus purpuratus XP_779939.1 I 0.776
XP_801812.1 Strongylocentrotus purpuratus XP_801812.1 I 0.776
ARB_05709 Arthroderma benhamiae ARB_05709 I 0.776
Bm1_04900 Brugia malayi Bm1_04900 I 0.776
CHGG_04762 Chaetomium globosum CHGG_04762 I 0.776
WUBG_12485 Wuchereria bancrofti WUBG_12485 I 0.776
XP_001176396.1 Strongylocentrotus purpuratus XP_001176396.1 I 0.776
NCU08277 Neurospora crassa NCU08277 I 0.776
TERG_00559 Trichophyton rubrum TERG_00559 I 0.776
Pa_6_5980 Podospora anserina Pa_6_5980 I 0.776
AB05699.1 Alternaria brassicicola AB05699.1 I 0.776
CAGL0B03795g Candida glabrata CAGL0B03795g I 0.776
estExt_fgenesh3_kg.C_30291 Neurospora discreta estExt_fgenesh3_kg.C_30291 I 0.776
estExt_Genewise1Plus.C_10999 Thielavia terrestris estExt_Genewise1Plus.C_10999 I 0.776
estExt_Genewise1Plus.C_2350006 Capitella teleta estExt_Genewise1Plus.C_2350006 I 0.776
estExt_fgenesh2_kg.C_40048 Neurospora tetrasperma estExt_fgenesh2_kg.C_40048 I 0.776
estExt_fgenesh1_pg.C_210136 Cochliobolus heterostrophus C5 estExt_fgenesh1_pg.C_210136 I 0.776
EAT79164.1 Phaeosphaeria nodorum EAT79164.1 I 0.776
GSTUMT00002346001 Tuber melanosporum GSTUMT00002346001 I 0.776
estExt_fgenesh1_kg.C_10157 Myceliophthora thermophila estExt_fgenesh1_kg.C_10157 I 0.776
estExt_Genewise1Plus.C_80350 Agaricus bisporus estExt_Genewise1Plus.C_80350 I 0.776
XP_001176254.1 Strongylocentrotus purpuratus XP_001176254.1 I 0.776
YALI0B01034g Yarrowia lipolytica YALI0B01034g I 0.776
PTRG_05239 Pyrenophora tritici repentis PTRG_05239 I 0.776
HCAG_01136 Histoplasma capsulatum HCAG_01136 I 0.776
EIF2S1 Tarsius syrichta ENSTSYG00000014171 I 0.776
SNOG_13280 Stagonospora nodorum SNOG_13280 I 0.776
LELG_00811 Lodderomyces elongisporus LELG_00811 I 0.776
LOAG_09556 Loa loa LOAG_09556 I 0.776
EIF2S1 Pteropus vampyrus ENSPVAG00000003040 I 0.776
MGYG_00686 Microsporum gypseum MGYG_00686 I 0.776
MCYG_00123 Microsporum canis MCYG_00123 I 0.776
CLUG_04130 Candida lusitaniae CLUG_04130 I 0.776
TESG_05324 Trichophyton tonsurans TESG_05324 I 0.776
TEQG_01370 Trichophyton equinum TEQG_01370 I 0.776
DEHA0F26235g Debaryomyces hansenii DEHA0F26235g I 0.776
FGSG_06220 Fusarium graminearum FGSG_06220 I 0.776
TRV_03711 Trichophyton verrucosum TRV_03711 I 0.776
CPAG_01889 Candida parapsilosis CPAG_01889 I 0.776
CTRG_04191 Candida tropicalis CTRG_04191 I 0.776
UM01463 Ustilago maydis UM01463 I 0.776
AFUA_3G13480 Aspergillus fumigatus CADAFUAG00005171 I 0.769
Scas_Contig479.2 Saccharomyces castellii Scas_Contig479.2 I 0.763
EDP42051.1 Malassezia globosa EDP42051.1 I 0.763
12209_YJR007W Saccharomyces mikatae 12209_YJR007W I 0.763
13294_YJR007W Saccharomyces bayanus 13294_YJR007W I 0.763
Scas_Contig617.9 Saccharomyces castellii Scas_Contig617.9 I 0.763
Cd36_06510 Candida dubliniensis Cd36_06510 I 0.763
estExt_fgenesh2_pg.C_150109 Monosiga brevicollis estExt_fgenesh2_pg.C_150109 I 0.763
12331_YJR007W Saccharomyces paradoxus 12331_YJR007W I 0.763
SUI2 Candida albicans orf19.6213 I 0.763
SUI2 Saccharomyces cerevisiae YJR007W I 0.763
MGG_13200 Magnaporthe oryzae MGG_13200 I 0.763
THAPSDRAFT_105 Thalassiosira pseudonana Thaps105 I 0.763
MDP0000674982 Malus x domestica MDP0000674982 N 0.763
SS1G_13048 Sclerotinia sclerotiorum SS1G_13048 I 0.759
CAOG_02542 Capsaspora owczarzaki CAOG_02542 I 0.756
Skud_Contig1955.10 Saccharomyces kudriavzevii Skud_Contig1955.10 I 0.750
e_gw1.2.367.1 Ostreococcus RCC809 e_gw1.2.367.1 I 0.750
AMAG_04113 Allomyces macrogynus AMAG_04113 I 0.750
AMSG_04936 Thecamonas trahens AMSG_04936 I 0.750
estExt_fgenesh1_pg.C_210283 Phytophthora capsici estExt_fgenesh1_pg.C_210283 I 0.750
PGUG_00485 Candida guilliermondii PGUG_00485 I 0.750
MDP0000951954 Malus x domestica MDP0000951954 N 0.750
EFA85538.1 Polysphondylium pallidum EFA85538.1 I 0.750
AMAG_01618 Allomyces macrogynus AMAG_01618 I 0.750
estExt_Genewise1Plus.C_230113 Phycomyces blakesleeanus estExt_Genewise1Plus.C_230113 I 0.750
estExt_Genewise1.C_51162 Mucor circinelloides estExt_Genewise1.C_51162 I 0.737
RO3G_13185 Rhizopus oryzae RO3G_13185 I 0.737
e_gw1.18.114.1 Tremella mesenterica e_gw1.18.114.1 I 0.737
RO3G_12494 Rhizopus oryzae RO3G_12494 I 0.737
SOCG_01617 Schizosaccharomyces octosporus SOCG_01617 I 0.724
AO090012000783 Aspergillus oryzae CADAORAG00006316 N 0.724
SPOG_03916 Schizosaccharomyces cryophilus SPOG_03916 I 0.724
GID1.0050760 Dictyostelium purpureum GID1.0050760 I 0.724
SJAG_03629 Schizosaccharomyces japonicus SJAG_03629 I 0.724
eif2s1 Xenopus tropicalis ENSXETG00000011221 I 0.724
fgeneshHS_pg.scaffold_37000098 Naegleria gruberi fgeneshHS_pg.scaffold_37000098 N 0.724
tif211 Schizosaccharomyces pombe SPAC3G9.09c I 0.724
eIF2s1 Dictyostelium discoideum DDB_G0271862 I 0.711
PPA05168 Pristionchus pacificus PPA05168 I 0.711
PGTG_13830 Puccinia graminis PGTG_13830 N 0.711
PTSG_05806 Salpingoeca rosetta PTSG_05806 I 0.711