estExt_fgenesh1_kg.C_70012 (Micromonas pusilla)
S1

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00575 (S1) IPR003029 estExt_fgenesh1_kg.C_70012 T61074_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
eIF-2alpha
M231_0.6 		Drosophila melanogaster WGCAUG RNAcompete
Ray et al.(2013)
RNCMPT00273 		0.776
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh1_kg.C_70012 S1 13 87

Links

Other S1 family RBPs
Other Micromonas pusilla RBPs

248 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
estExt_fgenesh1_pg.C_Chr_02.00010078 Ostreococcus tauri estExt_fgenesh1_pg.C_Chr_02.00010078 I 0.947
e_gwEuk.2.353.1 Ostreococcus lucimarinus e_gwEuk.2.353.1 I 0.947
IGS.gm_12_00191 Chlorella NC64A IGS.gm_12_00191 I 0.880
e_gwW.11.341.1 Chlamydomonas reinhardtii e_gwW.11.341.1 I 0.868
estExt_fgenesh1_pm.C_210071 Selaginella moellendorfii estExt_fgenesh1_pm.C_210071 I 0.867
estExt_fgenesh4_pg.C_220183 Volvox carteri estExt_fgenesh4_pg.C_220183 I 0.855
estExt_Genewise1.C_110295 Coccomyxa C 169 estExt_Genewise1.C_110295 I 0.855
fgenesh1_pg.scaffold_55000187 Physcomitrella patens fgenesh1_pg.scaffold_55000187 I 0.855
estExt_Genewise1.C_100332 Chlorella vulgaris estExt_Genewise1.C_100332 I 0.855
estExt_gwp_gw1.C_3520018 Physcomitrella patens estExt_gwp_gw1.C_3520018 I 0.842
cassava16515.m1 Manihot esculenta cassava16515.m1 I 0.840
PK10564.1 Cannabis sativa PK10564.1 I 0.829
Glyma18g02820.1 Glycine max Glyma18g02820.1 I 0.829
B9HHU6_POPTR Populus trichocarpa POPTR_0008s07250 I 0.829
Glyma11g35600.1 Glycine max Glyma11g35600.1 I 0.829
Medtr3g094730 Medicago truncatula Medtr3g094730 I 0.829
Medtr3g094740 Medicago truncatula Medtr3g094740 I 0.829
LjSGA_031492.1 Lotus japonicus LjSGA_031492.1 I 0.829
Cucsa.239320 Cucumis sativus Cucsa.239320 I 0.829
GSVIVG00024676001 Vitis vinifera GSVIVG00024676001 I 0.829
XM_002881666.1 Arabidopsis lyrata fgenesh2_kg.4__2141__AT2G40290.1 I 0.829
B9HSK1_POPTR Populus trichocarpa POPTR_0010s19230 I 0.829
29607.m000238 Ricinus communis 29607.m000238 I 0.829
ppa008120m Prunus persica ppa008120m I 0.829
MDP0000663428 Malus x domestica MDP0000663428 I 0.829
AT2G40290 Arabidopsis thaliana AT2G40290-TAIR-G I 0.829
MDP0000155133 Malus x domestica MDP0000155133 I 0.827
e_gw1.2.367.1 Ostreococcus RCC809 e_gw1.2.367.1 I 0.827
cassava7658.valid.m1 Manihot esculenta cassava7658.valid.m1 I 0.816
cassava7659.valid.m1 Manihot esculenta cassava7659.valid.m1 I 0.816
Medtr3g094720 Medicago truncatula Medtr3g094720 I 0.816
estExt_fgenesh2_kg.C_21286 Serpula lacrymans estExt_fgenesh2_kg.C_21286 I 0.816
e_gwh1.12.106.1 Laccaria bicolor e_gwh1.12.106.1 I 0.816
genemark.2222_g Pleurotus ostreatus genemark.2222_g I 0.816
estExt_Genewise1.C_100122 Postia placenta estExt_Genewise1.C_100122 I 0.816
CC1G_08524 Coprinopsis cinerea CC1G_08524 I 0.816
estExt_Genewise1.C_30452 Schizophyllum commune estExt_Genewise1.C_30452 I 0.816
e_gww2.12.213.1 Phanerochaete chrysosporium e_gww2.12.213.1 I 0.816
SPPG_00622 Spizellomyces punctatus SPPG_00622 I 0.813
estExt_fgenesh2_pg.C_150109 Monosiga brevicollis estExt_fgenesh2_pg.C_150109 I 0.813
estExt_fgenesh1_kg.C_130002 Sporobolomyces roseus estExt_fgenesh1_kg.C_130002 I 0.813
e_gw.114.57.1 Nematostella vectensis e_gw.114.57.1 I 0.803
mgf006782m Mimulus guttatus mgf006782m I 0.803
estExt_Genewise1Plus.C_80350 Agaricus bisporus estExt_Genewise1Plus.C_80350 I 0.803
estExt_fgenesh2_pm.C_120283 Heterobasidion annosum estExt_fgenesh2_pm.C_120283 I 0.803
KLTH0B02002g Kluyveromyces thermotolerans KLTH0B02002g I 0.803
PredSwiss_EST393.1 Pneumocystis carinii PredSwiss_EST393.1 I 0.803
estExt_GenewiseH_1.C_750056 Nematostella vectensis estExt_GenewiseH_1.C_750056 I 0.803
Kwal_15422 Kluyveromyces waltii Kwal_15422 I 0.803
PASA_GEN_0500123 Daphnia pulex PASA_GEN_0500123 I 0.803
ARB_05709 Arthroderma benhamiae ARB_05709 I 0.800
HCAG_01136 Histoplasma capsulatum HCAG_01136 I 0.800
KLLA0A11814g Kluyveromyces lactis KLLA0A11814g I 0.800
MCYG_00123 Microsporum canis MCYG_00123 I 0.800
e_gw1.7.228.1 Trichoplax adhaerens e_gw1.7.228.1 I 0.800
fgenesh_newKGs_kg.236__13__EST_ALL.fasta.Contig10263 Emiliania huxleyi fgenesh_newKGs_kg.236__13__EST_ALL.fasta.Contig10263 I 0.800
TRV_03711 Trichophyton verrucosum TRV_03711 I 0.800
EIF2 Arabidopsis thaliana AT5G05470-TAIR-G I 0.800
fgenesh1_pm.C_scaffold_69000005 Phytophthora ramorum fgenesh1_pm.C_scaffold_69000005 I 0.800
BRADI1G16700 Brachypodium distachyon BRADI1G16700 I 0.800
MGYG_00686 Microsporum gypseum MGYG_00686 I 0.800
TESG_05324 Trichophyton tonsurans TESG_05324 I 0.800
PITG_07885 Phytophthora infestans PITG_07885 I 0.800
TERG_00559 Trichophyton rubrum TERG_00559 I 0.800
EIF2S1 Tursiops truncatus ENSTTRG00000015806 I 0.800
TEQG_01370 Trichophyton equinum TEQG_01370 I 0.800
CAOG_02542 Capsaspora owczarzaki CAOG_02542 I 0.792
ACLA_041660 Aspergillus clavatus CADACLAG00004024 I 0.789
CIMG_00109 Coccidioides immitis CIMG_00109 I 0.789
ANIA_03156 Aspergillus nidulans CADANIAG00009914 I 0.789
ATEG_04051 Aspergillus terreus CADATEAG00009463 I 0.789
PHUM551010 Pediculus humanus PHUM551010 I 0.789
CPSG_04829 Coccidioides posadasii CPSG_04829 I 0.789
BC1G_14334 Botrytis cinerea BC1G_14334 I 0.789
AFLA_020350 Aspergillus flavus CADAFLAG00003920 I 0.789
VDBG_01622 Verticillium albo atrum VDBG_01622 I 0.789
GLRG_02833 Colletotrichum graminicola GLRG_02833 I 0.789
NFIA_063860 Neosartorya fischeri CADNFIAG00005762 I 0.789
estExt_fgenesh1_pg.C_20141 Mycosphaerella fijiensis estExt_fgenesh1_pg.C_20141 I 0.789
FVEG_06185 Fusarium verticillioides FVEG_06185 I 0.789
UREG_00217 Uncinocarpus reesii UREG_00217 I 0.789
nasonia_NCBI_hmm338664 Nasonia vitripennis nasonia_NCBI_hmm338664 I 0.789
amel4_ncbi_hmm23817 Apis mellifera amel4_ncbi_hmm23817 I 0.789
VDAG_01930 Verticillium dahliae VDAG_01930 I 0.789
FOXG_08491 Fusarium oxysporum FOXG_08491 I 0.789
BDBG_06604 Blastomyces dermatitidis BDBG_06604 I 0.789
AGR320W Ashbya gossypii AGR320W I 0.789
e_gw1.3.2112.1 Cryphonectria parasitica e_gw1.3.2112.1 I 0.789
fgenesh1_pm.00077_#_3 Aspergillus carbonarius fgenesh1_pm.00077_#_3 I 0.789
GSTUMT00002346001 Tuber melanosporum GSTUMT00002346001 I 0.789
BGIBMGA004302 Bombyx mori BGIBMGA004302 I 0.789
fgenesh1_pm.C_scaffold_10000060 Batrachochytrium dendrobatidis fgenesh1_pm.C_scaffold_10000060 I 0.789
estExt_fgenesh1_pm.C_chr_100036 Mycosphaerella graminicola estExt_fgenesh1_pm.C_chr_100036 I 0.789
estExt_Genewise1.C_100430 Trichoderma atroviride estExt_Genewise1.C_100430 I 0.789
estExt_Genewise1.C_10111 Trichoderma reesei estExt_Genewise1.C_10111 I 0.789
estExt_Genewise1.C_21511 Trichoderma virens estExt_Genewise1.C_21511 I 0.789
PMAA_021520 Penicillium marneffei PMAA_021520 I 0.789
estExt_Genewise1Plus.C_sca_18_chr2_1_00859 Nectria haematococca estExt_Genewise1Plus.C_sca_18_chr2_1_00859 I 0.789
SAKL0G14058g Lachancea kluyveri SAKL0G14058g I 0.789
XP_002492289.1 Pichia pastoris XP_002492289.1 I 0.789
GRMZM2G058138 Zea mays GRMZM2G058138 I 0.787
EIF2S1 Sus scrofa ENSSSCG00000002289 I 0.787
LOC_Os03g18510 Oryza sativa LOC_Os03g18510 I 0.787
fgenesh1_pg.C_scaffold_2000543 Melampsora laricis populina fgenesh1_pg.C_scaffold_2000543 I 0.787
GRMZM2G083262 Zea mays GRMZM2G083262 I 0.787
EIF2S1 Sorex araneus ENSSARG00000011682 I 0.787
eif2s1l Danio rerio ENSDARG00000005827 I 0.787
EIF2S1 Cavia porcellus ENSCPOG00000003313 I 0.787
LOC100399114 Callithrix jacchus ENSCJAG00000015368 I 0.787
EIF2S1 Spermophilus tridecemlineatus ENSSTOG00000001565 I 0.787
eif2s1 Danio rerio ENSDARG00000052178 I 0.787
IF2A_BOVIN Bos taurus ENSBTAG00000016311 I 0.787
estExt_fgenesh2_pm.C_sca_10068 Lottia gigantea estExt_fgenesh2_pm.C_sca_10068 I 0.787
BGIOSIBCE010732 Oryza indica BGIOSIBCE010732 I 0.787
EIF2S1 Takifugu rubripes ENSTRUG00000017958 I 0.787
estExt_fgenesh2_pm.C_5760005 Branchiostoma floridae estExt_fgenesh2_pm.C_5760005 I 0.787
estExt_fgenesh2_pm.C_1660010 Branchiostoma floridae estExt_fgenesh2_pm.C_1660010 I 0.787
Q7ZTK4 Xenopus laevis Q7ZTK4 I 0.787
SB01G038230 Sorghum bicolor Sb01g038230 I 0.787
EIF2S1 Tetraodon nigroviridis ENSTNIG00000012223 I 0.787
EIF2S1 Anolis carolinensis ENSACAG00000005994 I 0.787
AAH46576 Xenopus laevis AAH46576 I 0.787
EIF2S1 Taeniopygia guttata ENSTGUG00000011542 I 0.787
EIF2S1 Canis familiaris ENSCAFG00000016386 I 0.787
Eif2s1 Dipodomys ordii ENSDORG00000002382 I 0.787
Eif2s1 Mus musculus ENSMUSG00000021116 I 0.787
EIF2S1 Ornithorhynchus anatinus ENSOANG00000005409 I 0.787
114622 Helobdella robusta 114622 I 0.787
EIF2S1 Monodelphis domestica ENSMODG00000009911 I 0.787
EIF2S1 Macaca mulatta ENSMMUG00000021419 I 0.787
IF2A_RABIT Oryctolagus cuniculus ENSOCUG00000012023 I 0.787
EIF2S1 Ochotona princeps ENSOPRG00000004520 I 0.787
EIF2S1 Pan troglodytes ENSPTRG00000006462 I 0.787
ENSPPYG00000005921 Pongo pygmaeus ENSPPYG00000005921 I 0.787
EIF2S1 Procavia capensis ENSPCAG00000002613 I 0.787
EIF2S1 Oryzias latipes ENSORLG00000011844 I 0.787
LOC100052709 Equus caballus ENSECAG00000018424 I 0.787
EIF2S1 Microcebus murinus ENSMICG00000010793 I 0.787
XP_002156465.1 Hydra magnipapillata XP_002156465.1 I 0.787
IF2A_CHICK Gallus gallus ENSGALG00000009565 I 0.787
EIF2S1 Gasterosteus aculeatus ENSGACG00000008569 I 0.787
EIF2S1 Homo sapiens ENSG00000134001 I 0.787
EIF2S1 Erinaceus europaeus ENSEEUG00000010225 I 0.787
EIF2S1 Echinops telfairi ENSETEG00000019003 I 0.787
Eif2s1 Rattus norvegicus ENSRNOG00000009432 I 0.787
EIF2S1 Gorilla gorilla ENSGGOG00000001603 I 0.787
EIF2S1 Loxodonta africana ENSLAFG00000013423 I 0.787
EIF2S1 Meleagris gallopavo ENSMGAG00000011974 I 0.787
Ame_R013633 Ailuropoda melanoleuca Ame_R013633 I 0.787
XM_002873169.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_6000426 N 0.787
estExt_fgenesh1_pg.C_210136 Cochliobolus heterostrophus C5 estExt_fgenesh1_pg.C_210136 I 0.776
estExt_fgenesh2_kg.C_40048 Neurospora tetrasperma estExt_fgenesh2_kg.C_40048 I 0.776
CPIJ011194 Culex quinquefasciatus CPIJ011194 I 0.776
AAEL013675 Aedes aegypti AAEL013675 I 0.776
GE15968 Drosophila yakuba FBgn0233524 I 0.776
eIF-2alpha Drosophila melanogaster FBgn0261609 D 0.776
e_gw1.18.114.1 Tremella mesenterica e_gw1.18.114.1 I 0.776
GK25248 Drosophila willistoni FBgn0227207 I 0.776
PTRG_05239 Pyrenophora tritici repentis PTRG_05239 I 0.776
GD15749 Drosophila simulans FBgn0187410 I 0.776
GJ19141 Drosophila virilis FBgn0206286 I 0.776
LELG_00811 Lodderomyces elongisporus LELG_00811 I 0.776
FGSG_06220 Fusarium graminearum FGSG_06220 I 0.776
CPAG_01889 Candida parapsilosis CPAG_01889 I 0.776
CLUG_04130 Candida lusitaniae CLUG_04130 I 0.776
CpipJ_CPIJ011194 Culex pipiens CpipJ_CPIJ011194 I 0.776
Pa_6_5980 Podospora anserina Pa_6_5980 I 0.776
DEHA0F26235g Debaryomyces hansenii DEHA0F26235g I 0.776
CTRG_04191 Candida tropicalis CTRG_04191 I 0.776
estExt_fgenesh3_kg.C_30291 Neurospora discreta estExt_fgenesh3_kg.C_30291 I 0.776
AB05699.1 Alternaria brassicicola AB05699.1 I 0.776
CHGG_04762 Chaetomium globosum CHGG_04762 I 0.776
AGAP011190 Anopheles gambiae AGAP011190 I 0.776
GM13399 Drosophila sechellia FBgn0168330 I 0.776
GF19374 Drosophila ananassae FBgn0096384 I 0.776
estExt_Genewise1Plus.C_10999 Thielavia terrestris estExt_Genewise1Plus.C_10999 I 0.776
GA22144-RA Drosophila pseudoobscura FBgn0082124 I 0.776
estExt_fgenesh1_kg.C_10157 Myceliophthora thermophila estExt_fgenesh1_kg.C_10157 I 0.776
ZYRO0G12056g Zygosaccharomyces rouxii ZYRO0G12056g I 0.776
UM01463 Ustilago maydis UM01463 I 0.776
GL20268 Drosophila persimilis FBgn0157863 I 0.776
SNOG_13280 Stagonospora nodorum SNOG_13280 I 0.776
GI21763 Drosophila mojavensis FBgn0144493 I 0.776
A7TIH9_VANPO Vanderwaltozyma polyspora A7TIH9_VANPO I 0.776
EAT79164.1 Phaeosphaeria nodorum EAT79164.1 I 0.776
GG19321 Drosophila erecta FBgn0111525 I 0.776
NCU08277 Neurospora crassa NCU08277 I 0.776
72304 Aureococcus anophagefferens 72304 I 0.773
tif211 Schizosaccharomyces pombe SPAC3G9.09c I 0.773
69770 Aureococcus anophagefferens 69770 I 0.773
RO3G_13185 Rhizopus oryzae RO3G_13185 I 0.773
SPOG_03916 Schizosaccharomyces cryophilus SPOG_03916 I 0.773
Scas_Contig617.9 Saccharomyces castellii Scas_Contig617.9 I 0.773
SOCG_01617 Schizosaccharomyces octosporus SOCG_01617 I 0.773
SJAG_03629 Schizosaccharomyces japonicus SJAG_03629 I 0.773
estExt_Genewise1Plus.C_2350006 Capitella teleta estExt_Genewise1Plus.C_2350006 I 0.773
RO3G_12494 Rhizopus oryzae RO3G_12494 I 0.773
Scas_Contig479.2 Saccharomyces castellii Scas_Contig479.2 I 0.773
estExt_Genewise1Plus.C_230113 Phycomyces blakesleeanus estExt_Genewise1Plus.C_230113 I 0.773
BRADI1G65210 Brachypodium distachyon BRADI1G65210 N 0.773
ENSCHOG00000004230 Choloepus hoffmanni ENSCHOG00000004230 I 0.773
ENSCHOG00000009030 Choloepus hoffmanni ENSCHOG00000009030 I 0.773
estExt_Genewise1.C_51162 Mucor circinelloides estExt_Genewise1.C_51162 I 0.773
AFUA_3G13480 Aspergillus fumigatus CADAFUAG00005171 I 0.769
MGG_13200 Magnaporthe oryzae MGG_13200 I 0.763
CAGL0B03795g Candida glabrata CAGL0B03795g I 0.763
YALI0B01034g Yarrowia lipolytica YALI0B01034g I 0.763
EDP42051.1 Malassezia globosa EDP42051.1 I 0.763
Cd36_06510 Candida dubliniensis Cd36_06510 I 0.763
SUI2 Candida albicans orf19.6213 I 0.763
DGIL_AUG5s12507g4t1 Acyrtosiphon pisum DGIL_AUG5s12507g4t1 I 0.763
estExt_fgenesh2_kg.C_20112 Fragilariopsis cylindrus estExt_fgenesh2_kg.C_20112 I 0.763
XP_001176396.1 Strongylocentrotus purpuratus XP_001176396.1 I 0.760
XP_001176254.1 Strongylocentrotus purpuratus XP_001176254.1 I 0.760
WUBG_12485 Wuchereria bancrofti WUBG_12485 I 0.760
XP_779939.1 Strongylocentrotus purpuratus XP_779939.1 I 0.760
AMSG_04936 Thecamonas trahens AMSG_04936 I 0.760
ENSCHOG00000003744 Choloepus hoffmanni ENSCHOG00000003744 I 0.760
LOAG_09556 Loa loa LOAG_09556 I 0.760
Bm1_04900 Brugia malayi Bm1_04900 I 0.760
XP_801812.1 Strongylocentrotus purpuratus XP_801812.1 I 0.760
SS1G_13048 Sclerotinia sclerotiorum SS1G_13048 I 0.759
SUI2 Saccharomyces cerevisiae YJR007W I 0.750
12331_YJR007W Saccharomyces paradoxus 12331_YJR007W I 0.750
PGUG_00485 Candida guilliermondii PGUG_00485 I 0.750
ISCW017360 Ixodes scapularis ISCW017360 I 0.750
12209_YJR007W Saccharomyces mikatae 12209_YJR007W I 0.750
13294_YJR007W Saccharomyces bayanus 13294_YJR007W I 0.750
PHATRDRAFT_34538 Phaeodactylum tricornutum Phatr34538 I 0.750
estExt_fgenesh1_pg.C_210283 Phytophthora capsici estExt_fgenesh1_pg.C_210283 I 0.747
AMAG_01618 Allomyces macrogynus AMAG_01618 I 0.747
LOC_Os07g49220 Oryza sativa LOC_Os07g49220 I 0.747
PTSG_05806 Salpingoeca rosetta PTSG_05806 I 0.747
BGIOSIBCE026135 Oryza indica BGIOSIBCE026135 I 0.747
AMAG_04113 Allomyces macrogynus AMAG_04113 I 0.747
Skud_Contig1955.10 Saccharomyces kudriavzevii Skud_Contig1955.10 I 0.737
EIF2S1 Tarsius syrichta ENSTSYG00000014171 I 0.737
EIF2S1 Pteropus vampyrus ENSPVAG00000003040 I 0.733
AO090012000783 Aspergillus oryzae CADAORAG00006316 N 0.724
THAPSDRAFT_105 Thalassiosira pseudonana Thaps105 I 0.724
PPA05168 Pristionchus pacificus PPA05168 I 0.720
MDP0000674982 Malus x domestica MDP0000674982 N 0.711
MDP0000951954 Malus x domestica MDP0000951954 N 0.707
TGME49_113230 Toxoplasma gondii TGME49_113230 I 0.707
TGGT1_089620 Toxoplasma gondii TGGT1_089620 I 0.707
TGVEG_097260 Toxoplasma gondii TGVEG_097260 I 0.707
NCLIV_056550 Neospora caninum NCLIV_056550 I 0.707
PGTG_13830 Puccinia graminis PGTG_13830 N 0.707